NONHSAT017204
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT017204 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3417 nt |
Genomic location |
chr11+:210364..213780 |
Exon number |
1 |
Exons |
210364..213780 |
Genome context |
|
Sequence |
000001 TGGAGTTTTT AGGAAGACAG CAGTGGTCAT CTTTTGCCCC CAGCACTACC CAGAGTCACC TAGGAAGACC CCAGGGGACC 000080
000081 AGGTATGCAG TACAGGAGGT GCACAGTCAT TGCCACACAG TCCTGGAGTG CAACAGACAG TGGAGCCTCA GCAGGCAGCA 000160 000161 GTGGGATGAG TGGGGCTCCT CACAGGAACC CTTCTTTCTT TGGTCAGGAA GACGCTGCCC TTTACCGACA CCTGGGGACC 000240 000241 CTTCTCCGGC ACTGTGTGAT GATCGCTACT GCTGGAGACC GCACAGAGGA GTTCCACGGG TGAGAATGGG GCTTTTTCTG 000320 000321 GGAGGGAAGT GTGCCCACAT GTCTAGATGG TCGTCCTCAA CCCCGGCTCT GAACCAGAAC CACCTGAGAG CCCAGGCCCC 000400 000401 ACCCTAGAGA GTCTGACGTT GTCTGGGTGA GTGAGACTGG ACATAGCCAT GAATTTGGGG GCAGGAATGT GCCAACTGGG 000480 000481 CCTTGGGTAG TGGCAACAGT ATGGTACTTA CTAGGGCACA TTGGTTCCTT GTCCCCGTTT TTGGTCTACC TGCCCCTAGG 000560 000561 CTGGTCTGGG TTTCCAGAGA TGGTCTGGCG CTTTGGCTCA GACAGGGTCG GGGAGGCAGT GTGTCTCAGT GCCCCCACTT 000640 000641 CCCCAGGGGA CCCCACTGTA CAGCTGAGTG GCAGTGCCTC TCAGATCAGT CCCTGCCCTT GGCTTTGGTC CCTAGCGCTG 000720 000721 CCCCTTTGGG ACTCAGATGC CAGCTCATGT AATGTGTGGT TCAGCGGAGT CACAAAGATT GCACCTGTGC TCAGGGATTA 000800 000801 GCCCTGTTGA AACCCCTACC TCCATCTGTC CCCAGCCACG CAGTGAACCT CCTGGGGAAC TTGCCCCTCA AGTGTCTGGA 000880 000881 TGTTCTCCTC ACCCTGGAGC CACATGGAGA CTCCACGGAG TTCATGGGAG TGAATATGGA TGTGATTCGT GCCCTCCTCA 000960 000961 TCTTCCTAGA GAAGCGTTTG CACAAGGTAG GCTGGGGATG GCTGTGCAGG CTCCCCCAGT GGCTCTGGCA CTGGTTCTCC 001040 001041 TGCACAGATG TGGTCAGTGC TTCCACACTG TCCACACTGG TACGTGGAGA TTGTCTTGGT GGTGTGATAT GGGCGACTCT 001120 001121 TCCGGTTGTT CTGTGGTCCA GCCTGGCAAG AAGCCAGACC CTTCCTCCAT GAGAAGCATG TGGACACCTT CCACACACTT 001200 001201 GAAGGTTTCA CTTCTTAAAT CTTTGGGGAT CTTTACTGAG TGGTCCAGAG AAGCCCCCCA GTCCCTACTT TTAAGTCTTA 001280 001281 AACACAGGCA GCCCTTGATT ACAAGCATAG TTGTCCCTCA GCATCCTGAG GAGACCCATA GGAACCTCAG ATCAAAGCTT 001360 001361 CCTTCTGATT GCTGTGACTG CACTACAGGG CATCTGGACA GCTGGGGCTC TAACCATCTT CCAGGAGCTT GCAGAAAGCA 001440 001441 GGCTGGAGTA CAATAAACCG AGATTTAGTA GACCTCCTGG GAATCTACCT GCCTAAGCAA GGGACACACA AGGTGCCTGC 001520 001521 GAGCCAGTCA GGATAGGGAG CTGGCACTGG ACACACAGCT AGGGGGTTGT CTGTGCCCGT CGCTGCCACT GCTGGTGCTG 001600 001601 GGGTCCAGGC ACATTATGCT AGGAGGGTCA AGAACTCCCT GCTCTGTCCA CGAAGTACAC AGAGCGGGGA TTCGGTTCTC 001680 001681 GTTTCTTTTT GCCACCAACA TCTGAGGGCA ATGTGTGTGC GAGTCTAAAG CTTTAATTGC TTTGTGTTTT CTTCCCAGCT 001760 001761 CTGGTTTATA GTTGAAGTAA TTAGACTTAA AGCAGTTATT TCTCCCAAGT CACAAAGCTT ACGAGTACCT CTGAGTTACG 001840 001841 CTCTATCCCT GTCCTTTTCA AAAGTGACAC AGACACCCAC CACCCACTCT TGGCCTTCTG CTGACTAACT GCAGAGGGGC 001920 001921 CTCTTCCCAA ACCTCTGCCG CCAGGACCAG CTGTTGTGTA TGTTGGTGGG AAGGGGTGGT GGGGAGGTGT AACTCTGTGC 002000 002001 CAGTCACAAG TTAGGCAGGG GCATAGCCCC AGTGACAGAG AATCCTCTAC AGACACACAG GCTGAAGGAG AGTGTAGCTC 002080 002081 CCGTGCTGAG CGTGCTGACT GAATGTGCCC GGATGCACCG CCCAGCCAGG AAGTTCCTGA AGGCCCAGGT ATAAGGCTGA 002160 002161 GGAGCTGGTG CTCCTGGGGG ATGTGGTTTC GGCCCTGATC ACAGACCCTT GGCTGCTCTA AGCCCAAGCT TAGGGATGGC 002240 002241 CACCTCCCCA GGTGCTGCCC CCTCTGCGGG ATGTGAGGAC ACGGCCTGAG GTTGGGGAGA TGCTGCGGAA CAAGCTTGTC 002320 002321 CGCCTCATGA CACACCTGGA CACAGATGTG AAGAGGGTGG CTGCCGAGTT CTTGTTTGTC CTGTGCTCTG AGAGTGGTGA 002400 002401 GTTATGGAGA CCCAGGTCCC AGCCCACCCC ACCTCAGCCA GGCTTGCACA CTGACCTCTG CCTTGCCCCT CAGTGCCCCG 002480 002481 ATTCATCAAG TACACAGGCT ATGGGAATGC TGCTGGCCTT CTGGCTGCCA GGGGCCTCAT GGCAGGAGGC CGGCCCGAGG 002560 002561 GCCAGTACTC AGAGGATGAG GACACAGACA CAGATGAGTA CAAGGAAGCC AAAGCCAGGT GTGTACCCCC AACACACCCT 002640 002641 CGGGTCTCCA CTCACAGCCC CATAGTCCCT GCTTCCACAC CCATGTGGAC CCCTGTAGGG TGGGACAGGA TGACAAATGG 002720 002721 GCAAGAGCTT CCAGAATCAA GCACCTGTTC CTAAGTGCTA TCTGGGATAC CAGAAGGTGG CAGATGGCAG GAGCTGGTTA 002800 002801 CCTGTGCCGC TTCTGGAGGG AGGCCTCTTC CTGCAGTTGC CTTGCCCACC TCACCCCACT GGGAAAATAG GTGGCTTGCC 002880 002881 TCCTGTCCTG GAGAGTCACT AATGCATTCC CCACATTCCA CCCACTGGGA AACAGCATAA ACCCTGTGAC CGGGAGGGTG 002960 002961 GAGGAGAAGC CGCCTAACCC TATGGAGGGC ATGACAGAGG AGCAGAAGGA GCACGAGGCC ATGAAGCTGG TGACCATGTT 003040 003041 TGACAAGCTC TCCAGGTGTG TGGCATGAGG AGGAGGGGCC TGCAGCTGGG AGAAGGGAGA GCTGACCCAC ATCCTGTCTT 003120 003121 GTGAGCCCCA GGAGGTAGGA TCAGAGGAGA GCTTAGGATC CTGGTATTAG GTTGCATTGC TCACGTTTGA AATCACTTGC 003200 003201 CCTGGAGGAA ATCCCCCAGG GGATGGGTAT ATTGAGATCA Gtattgtgcc ccttttacag atgataactg aggcccagag 003280 003281 aaattaagag actgtctaag gccgggcgtg gtagctcacg cctataatcc cagcactttg ggagactgag gcaggtagat 003360 003361 cacaaggtca ggagatcgag accatcctgg ccaacatggt gaaaccccat ctctgct |
Predicted Small Protein
Name | NONHSAT017204_smProtein_500:751 |
Length | 84 |
Molecular weight | 9157.7287 |
Aromaticity | 0.0843373493976 |
Instability index | 52.334939759 |
Isoelectric point | 9.46783447266 |
Runs | 13 |
Runs residual | 0.0165997322624 |
Runs probability | 0.0468794586442 |
Amino acid sequence | MVLTRAHWFLVPVFGLPAPRLVWVSRDGLALWLRQGRGGSVSQCPHFPRGPHCTAEWQCL SDQSLPLALVPSAAPLGLRCQLM |
Secondary structure | LEELLLLEEEELLLLLLLLLEEEEELHHHHHHHHHLLLLLLLLLLLLLLLLLLLLEEEEE LLLLLLLLLLLLLLLLLLEEELL |
PRMN | - |
PiMo | - |