NONHSAT025205
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT025205 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
5463 nt |
Genomic location |
chr11-:133167084..133172529 |
Exon number |
1 |
Exons |
133167084..133172529 |
Genome context |
|
Sequence |
000001 GTGCCATGTG AAATTTCTGT CATATACTGT TACCTGAAGT AGCCTTGCCC ACCACCCCAC CTGCCCTTTG AATGCCAGTG 000080
000081 TGAATCCTAC ATGTGTTCAC ACACCAGGTC ATTTCGCTTC TCTGTATGAA GCTGAATTAG TCCGTTCTCA CTTTGCTATG 000160 000161 AAGAAATACC CGAGGCTGGG TAATTTATAA AGGAATGAGA TTTAATTGAC TCACAGTTCC ACATGGCAGG GAAGGCCTCA 000240 000241 GGAAACTTAC AATCATGGTG GAAGGCACCT CTTCACAGGG TGGCAGGAGA GAGAATGAGA GCCGGCAGGG GAAATGACAG 000320 000321 ATGCTTACAA AACCAACAGA TCTCCCGAGA ACTCACTATC ATGAGAACAG CATGGGGGAA CCGCCCCTGT GATTCAATTA 000400 000401 CCTCCACCTG GTCCTGCCCT GGAAATGAGG GGATTATGGA GATTACAATT CAAGGTGAGA TCTGGGTGGG GACACAGAGC 000480 000481 CAAGCCATAT CAGAAGCTTT TAGCAGTTAT CTTAGCTCAC AATGGACTCT TCCTTCTCCT AATTTTTCTG ACACTTATAG 000560 000561 TCAGAATCAT GTAACTTAGC ACAATAAAGT CTTGCATTGA CCTTGGATTG ATTAACATCT TCTATGTCTT TCCAAGCTTT 000640 000641 TTATGTCTCC AACAAAATTA CGTATGTGGA CTAAATATTC TACTTTTTAC ATTTTCCAGT GCCTAGTATA TAGTAATTCA 000720 000721 CATTCATGGG TATTTGTAAT TTGAGTCCAT ATAGTTTCTG ACTATGGATC CAGAAGATGT CATTGGCTGA AATTATGTTA 000800 000801 ACTTTTTTTA ATGCCTCTTC ATACTATCTT GTATATGTTC AGTGTCCAAA TTAAGTTGTT GTCTGATTGT TTCCCCACCC 000880 000881 TCCACACATA AATATGAACA AACAAGCAGA CATTTACTCT GAAGGAGTCC AGGTACACTA CCTAAGCGCA TGTCAAAGAA 000960 000961 TTATTTTAAG TGAGACTTCC AGTTTCCCCC TCCGATTTTA TCAAAAAAGT TTACATAGAT ATTTCTTCTG AAATAAAGCC 001040 001041 AAGAAAGACT TAAAACCACA TTTACCTAAA CATATGGAAC ATGTCCTCAT CCCTAACAAA AGCTCTCAAT GCTATCAATT 001120 001121 AAAAAAATAC AACCTGGAAT TGAGACCTGT ATTCATTTTG GAACAAACCT CAAATTCGTA TTTTTGTGGT GAGACCAAAT 001200 001201 TGAAAACCTC ATCTTTAAGC AATAAATATC TCTGAGCAGA TTCTCTCTAC TTCAGCCACC AAAGTAATTC CTTGTTTCCA 001280 001281 AAATTTGTAG AAAAGCTTGT GAGCAAATTA TTTCTAAAAT GACAGACTTT TTCCTCTGTA CTTCAAAAAC TATATATTGC 001360 001361 ATGCCTACTC TAGGCATGGG ATTGTGTTAA TTGTACCATG GATGATGTAA CAAAGACTAA AATACCATGC ATATCTAGGG 001440 001441 TGACTATATA GTTTATCACC AAACTAGAAC TGTTTTGAGA GTGAAAGGAG AGTTGTTAGA ATCCTGCTAG GCTGATGAGC 001520 001521 ATAAACAAAA TTCTGCATGT GTAGCCACCC TGTACATCTG TGTCAGTTTC TTATGGCTAC TCTAACAATT ACCATAAACC 001600 001601 TGGTGGTTTG AAATAACATA AATTTATTCT GTGACAGTTC CAGAGGCCAG AAGTCCAAAA TTAGTATCAC TGAGCCAAAA 001680 001681 TCTCCATGTT GACTGGCTGT ACTCCTGGAG ACTCTCAGGA GAGTCCTTTT CTCCTCTCTT CCAGCTTCTG GCGGCTGCCC 001760 001761 ACATGCCTTG GCTTGTGCCC GCACCAATCC AGTCTCTGCC TATGTGGTAG CATTGCTTCC TCCTCTTCTG TCTTTATGAA 001840 001841 ATCACGCTCT GCCTCCCTCT TAAGGGAACA CTTGTGATGG TGTTCAGAGT CCACCAAAAT ATTCCAGGGC AATATCTCCA 001920 001921 TCTCCATGTT AACTTAACCA TAGCTGCAAA GACCCCTTCT CCTCATACAA AACGATGTTT ACAAATTCTA GGGAAAAAGG 002000 002001 CCTGATATCT TTAGAAGATA TTATTCCGCT CACCACACGA TTCCCATCTT TTAAAATTAG ACACCTCATC AGGAAGTATT 002080 002081 GTGATTTGGT GACACATGAG TGATATGGAC AATACTGTGC TGTAGAAGAA ACAAATCACT TGACCTTGAG GCACCCTTAC 002160 002161 CTTGAAAGAA TAGGCAGAAT TTGGAAAAAT ACAGAGGAAT GCATCACTGA CAGGTAAAGC ACAAGCAAAG GTTTGGAAGA 002240 002241 GGGGCTAAGC AAGGATGTTT GGGGGACAAA AAAGGAGACC ACCTTGCCTT GAATATAGAG TTCACACAAG AGCAGCAGGG 002320 002321 GAGAAGCATG AACGTCAGTT TGGCATCAGG GGGCTGGTTT TTCCTCATTC CAAGCTCTTC TCATTTTTCT ACTTTATTTA 002400 002401 CTTGAAAACT CTCTTTCTCC TTAATCTTTC AGTCAGTTAA TCTTTACACC TCCATGATCC TTCATTTCTT TTCCCCTTTG 002480 002481 ATGATTTCCG ATGCTCTGCT TCTGAACTCT TCCTAAGTTC TGCCATAGTG ATTCCCCTCT GTCTGTACTG CTGTTCCTAC 002560 002561 TGCTTTGCTT TGCAGCTCTT CTGCATTTGA CTGTGAGCTC ACTGAAAGAA AGGACCGTGG CATGTGCATC TTTGTGTCTC 002640 002641 CAGAATTTAA TTAGCACAGG GAGTAATTTA TAAGGGGTGA ATGAATCAGT ATGGAGATTT ATACCAAGGA CCCTCAACTT 002720 002721 CACTGAAGGT CTTTAATGAT GGTGCTGATG TTAGTGGTGG TCGTGGCGGT ATTTAATTAT TTTTTCTAGG TAGGGATCCC 002800 002801 TTCTTTCCTC CTCTTCCCGT TCACCTGCTC TTCATCACAG ACAAGTATGG AGCTCCTCAG GCACCATCCA AATTAGGGTC 002880 002881 ATCCTAATAA TTTGACCCCT TCATCTACTT AGGAGGAAAT ACTGAAATCC TCCCTAATAA AAAGCTAGGT ACAGTATGTT 002960 002961 CTGTCTGGAG ATATTCAGAG ATGGTATAAA TTATTTTCTT CTGGCAATTT CAGGTATGCT TGTCTCACTT TCTCATACGT 003040 003041 ATTAACTCAC TTTTAATAAT CTACCCATTT TCTCTTGTTC TGCCTTTAGG CAATTGGGAA ATAAGTGATT GGGCACTTGT 003120 003121 TCTTGATAAC TTGTGGATGG TTTTGGTTTC TGGTTGCTGT AATTAAAGGT GACTTAAGTA GAAGAAATTA GGTGTCTGCC 003200 003201 CACTAATAAG CAAGGTGATG TTCATAAGCT GCTTTGCCAC TATTGGCCTC AGAGCTTCAA CCCCAGCAAC TTCCATTAAA 003280 003281 GCCAGGGATT AACTATTAGT GCAGCACAGT GGAAGGAACC AGAAGAACAG TTCTTTGGGT CCCAGCAACA AATTACTTCT 003360 003361 GAATGAAACC TCTGATTAAT GGCTCCAGAG TTGCCTCTTT GTTTTGCATA ATTAAGTTTC ATGGAGTGTT ACAATGAACA 003440 003441 ACCTTGCCAT CACCCAGGTA GAAACAGCCA CCATTTATTT GGCCAGCAGT GTCAGAAAGT GCTGGGTGGT GAATAAGAAG 003520 003521 CATTTATGAG GGGATTAGGT GCATTTGGGT CATAATTGAA TAAGGCTATA ATTACTTTTC ATTAAAAAGC TACAAATAGG 003600 003601 ATGACCCTAT GATACTATAC CAAGTCCCCT TTCATTTTTT TTTTCCTGCT GATCTGGGTC TAAGAACTTC CTTCTCTAGT 003680 003681 CAAATAATGG CCATAATACA GAGAAATTTG TAGTTATATA TGAAAGTTGA CTGTTTCCTC TTTCTGCACC TCCAGCGCAT 003760 003761 ATCTTGTTTT ATGACATTTA TTATGGCCGC TTTTGTTATC ACACAAGCAG TCTGATATGC AATGTAGATG TCAAGTAAGC 003840 003841 TTGAGACTCT TGTAGCTGCC TGAGAAGAAA GTCAAGGTTC ATTGGGGCTA CTGGGAGACA ACAAAGTGTC TAGTACGTTG 003920 003921 TTGCTGGTGA GCAGGCCAGG AATCAACCAT TTGTCCATGT CAAGAGATTA AAACATGATC AAAAAATGTT TTCTTTATAG 004000 004001 TTTTTTTTCC CCTGTGGAAT GACATTTCTC TGACACAGTT ATTCCTTTGA CCAGTATCGT TTTGATGTTA AGGCAGAGAG 004080 004081 ACCAAGAGGA GCCATTGTAG GGATGGCATC CTCTGTTCTA GTCAAGTTTT CCTTGGGTCA ATAGAATTTT TTAAAAAATG 004160 004161 AATAATAGCA ACTACTTGTA TGGAGTTTTC TACATGCCAG GTACTTTTCT ATGCTCTTTA CTTGAACATA TTTATTTAAT 004240 004241 GAAGAATTTG CTCCAAATAT TTGATGATTT TTACCATTTT CTGTCTTTCT TACTTCCTTA TTTTTACCAT CCCTCTCTTC 004320 004321 CTGAATTTAT CTATTTCCTC TCTGCTCCTT TCTCCTGCTC TCCCTCCCTA TCTTTCTTCT TGGCTATCTT TATACTGTGT 004400 004401 CTGGGATTTG ATCAAGGGAG AAAGAGAAAG CAATATGAAA CCTGAAGAAC ACAATTCAAG CCCTGGAACT ACCACTAGAC 004480 004481 ATGAGTGTGA TTTTGAGCAA GCTGATGAAT CAAATTGGGC CCTATGTTGC TTATAAAGAA GAAGGAAAAG GAGGAGATGA 004560 004561 AGAAGGAGGA GTAAGAAGAG AAGCAGGAAG GAATGAAGAA GAAAGAAGGG GAGAAGGAGG AGAAGGGGGA GAAATAGAAG 004640 004641 GAAGAGGATG AGAAATTGGA GAAAGAAGGG GAGGAGGGAA CAGTAGTAAT ACCTATTCTA CCCATAGTAA AATGTTGCCA 004720 004721 TAAAAATCAA AGGAGACAGT GCCTATGAAA ATCCTCTGTA AATTGTAAAG AACTCTACGA ATTCAACTTT TTTTGCTGAC 004800 004801 CTCCTAATGG ATGTTTTCAG GAATTTTACT AAGATTTAGA GCCAGACATG TTTTTTAAAA GAGAGAGAGA TCATGCTCTA 004880 004881 GACAAATTGG GTGCCTCATT ATACACTTAC CAGGAGGAAA ATGCTGCCAT TCCTGGCTAA AAACCCATTT GTCTTGCAAA 004960 004961 TATCTATAAT GAACAGATTT TGGGATAAAT ACTATGTAAT CTGTGATGAC AGTTCTCTCA TTTCTTTTTT ATTAGTTCAA 005040 005041 TCTTCTCAGC ATCTGAACCA CATAGCTACA GAACCTCCAT AATCATTAAG GCAGCTGGGA CGTATGCATT TTTTCTCCTT 005120 005121 TCCTTGGCAC ATCACAGAGT CCCCAATCAG TCCCTTGTTA CAAGGCCTAT GTTCTAGTAG TAGTTAAATG CACCTGTATA 005200 005201 AGAATGCCAG AACAGAAAAG AAAACAAACA GCAGGGTGCA TGGCCTTTGC AACAAAGTTC CATTTTCACA ACTGACCTTT 005280 005281 CCCTGGGTAT TTAAAACTTG GGTTTTACTT GGAGCTTGTG GATAATTTGC ATTGCACTAA ACATCCCTTT GCTTAAAATA 005360 005361 GATAATCTCA GTGGAATATA AGGTGGTTGC AGTAAACTCT AACCCACCTT ATTCTCTATC CCTTTTCCCT TTGTCTTTCC 005440 005441 CTAGAAAAAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT025205_smProtein_4157:4444 |
Length | 96 |
Molecular weight | 11346.1287 |
Aromaticity | 0.242105263158 |
Instability index | 69.6603157895 |
Isoelectric point | 6.22918701172 |
Runs | 9 |
Runs residual | 0.0343141317862 |
Runs probability | 0.0969597048028 |
Amino acid sequence | MNNSNYLYGVFYMPGTFLCSLLEHIYLMKNLLQIFDDFYHFLSFLLPYFYHPSLPEFIYF LSAPFSCSPSLSFFLAIFILCLGFDQGRKRKQYET |
Secondary structure | LLLLLEEEEEEELLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLHHHHHH HLLLLLLLLLHHHHHHHHHHHHLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLH HHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooT TTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiii |