NONHSAT028516
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT028516 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2835 nt |
Genomic location |
chr12-:54375293..54378108 |
Exon number |
1 |
Exons |
54375293..54378108 |
Genome context |
|
Sequence |
000001 GGTGGCACCC GATCCCCGAC CCGAGAGCTG TGGCCTGGGC CTGGCAGGGT GGGCGGCTCC TGGGTCACCA TCTCAGGGGC 000080
000081 CCACAAGGCT TTGGCCTTGG AGCCGGTTCT GCTGCTTTAC TTCAGGCCCT GGCGGTCCTC GCTTTCCGCT TGACCTTGCC 000160 000161 CCCGCTAAAA CAGGGAATAT TCCGGGAAAG AAAGAGGGAA CCTGCGGAGC CTCGGTCAGT TTGGAGGAGT CACGTATCAC 000240 000241 ACGGGAAACC AGCACACAAG ACGCAACAAA ACCCGACCCA GAGAAGCGTC CTTTGCAGAG CGCACGGGCT GGGAGCACGT 000320 000321 TTGAAAGAAG ACAGACCAGT CTATTTTTGT TGTTGTTTTT AAATAAAAGG AAGAAATAAG GGGAACCGTA TGTTTCAAAC 000400 000401 AGTTATTTCC GTTTCTCCAT CGCCTTCTTC CAAAGCGAAC TAAACTCTCC ACCCCTTCCT CAGGAAACGG AATCTGGAGA 000480 000481 ACAACTTGTC TTTCCTGTCG CCCCACATTT TTCCTTGGAC AGAGCCTAGG GTTCAGACTT TCCGAAGGGC TGGAGTTTGG 000560 000561 CGGGGAAAGG ACTGGAGCCC AGCGCCCTGG AGTGGAGGAG TGAGGAGGCT AGACCGTTTC TAAGGAGGCC CAAGCCCGCT 000640 000641 GCGGCTAGAA GACCGCAGAA AGAAATCCGC CGAATTTCCC CATCCAGGGG TGGAGAGAGA AGACGCAGGG GTTCCTGAAC 000720 000721 CTCCGGAAAA CTGGAAGGAA ATGTGGAGTG TATGATTTGC TTGCAGGACC GGCCAGGGGA GATTTGAAAT GGTTTTGTGT 000800 000801 TTTCATATGC AGGGTCACCG TGGCCTCAGC ATGGGGGTTA TCCAGGGCAA GGTTAGGCTG TTTAGGCCCC AGACTTGGGA 000880 000881 CAGTCCGGGC AGCAGTCAAT CCAGGGAGCC ATTTGTCCCA CCGCCCATCC CGCGGGAAAC GGGCGAGACT TTATGGCCAC 000960 000961 TCTGTTTGTA TTATCTGCAT TAGTCTTTCC CCACCAGTTT GATCGAAACC GTTCCCTTTT ACGAGGACCC AACGAAAATT 001040 001041 TCCCGTCATA TTTATCAGCC AGGGATAAAA ATTTAGTATG GGAACTGATA TTTCCTCATT TATGGGACGA TGAAATTAAA 001120 001121 TACCAAAGCA ATTGAGAATT ATATGGCTTT GGGGGTTCCC TCCCCCCTCT TTCACGTCTC CTTTATTTTC CTGCCTGGTG 001200 001201 TGCTTTTCCC AGGAATTTAG CGTCCCAGTT CCCTACCCTT ACCCCCCACT TTGGAGTCTG GTGGGTCCTT TTCCCCACGG 001280 001281 CCAAGTGGCC CTTGGCCACC TCAGCCTTTT CTTTTTTTTT TTTCTCTGGG TGTTAGTAGC TGGGGGCCAG GACAGTGCTA 001360 001361 CCCGAGCCTC TGCCCAGGCC AGCCAGGACA GGCTGGGATC AGAGAAAGGT TTCCAGGGAA GAGCCGCAAA GGGTTTGAGC 001440 001441 CCAGCCTGGG AGGGGGTGAA GGAGTCGGCA GGAAAGGGTG AAGGAGATAA ACTTCAGACA AGCCCCAAGG CGTAGCCTGG 001520 001521 GGAACCAGCA GACAGGGAGC AGACCCATCG GCCTCAGGGG TCCCACCACC CAACCTCTTT CCAAGCCCAC CTCTCACCTT 001600 001601 AGCCAAGGGA GAGGACAGAG TCGCTTCGGA ATTATCGCCA TCATTAATGA AAATAATACT CCAGGGAGGA GCCTCCCGCC 001680 001681 TCGACTCCCA CCTCCTCACA AGACAGAATA GTGTTTAAAG TTGAAATAAT TAGAAGTATG ATAAACACGG CCGATTAATG 001760 001761 AAAAAAGAAA TCAAATTCAT CAGCCTAAGT GGGACCCCCG GTGGGACAAA TGTTTGCCTC TAATTACGCA AGATAAACGA 001840 001841 AAACCCGGTG CTGCTAAACT AGAGCCCGCT CGGACGCAGA CCTGAATAAC TTGTTGGGTT TTCACAGACT TTGAGATTCT 001920 001921 GCTTCAGTGG AGGTAAAAGG AAGGAAAAAG TGAGTGTTTT ATCCTGGCGA AGGGAGCATT TGTGCGGGCC TGGGTCCCAG 002000 002001 CCCTGCCCCC TTGGGCTCGG TCTTTCCCGA GGCCACGAGC AAAGGCTGTT TCGGTCCTAT TGTCCGGGCC TGGCGTTCAA 002080 002081 AGGCATGCGG GCCGCCACAG CGACCCCGCC TGCCGCCACT GCCAGGCACC CACCGCCCTG CCCCACAGGG CCAAGATCCT 002160 002161 TCAGCCTGTG CCCTTGGCAA CTGGATTAGG ATCCAGGGGA GGCCTGTGTT GCTAGAATCA CCCACATATG GACTTTTATT 002240 002241 AATCCATTTC CCCAACTTTC CGAGGGCGCT GAGACACCTA TGCCTATGCC TACGTCTGGG GCTCCCCCCT CTTACCTCAA 002320 002321 CTTGGGAACA TGAAAATCCA GGGGCTGCAA GCCACAGTGG GGCTCAAGCT GTGCATACGA CCTGACAAAT CCCACCCAGG 002400 002401 GCCAATGCCC TGGCCCCTTT CTCCCTTCCC GGGTACCCAG ATCCTGGAAA GGCAACAAGG ACGGGGCTGG GCCTCCTTCT 002480 002481 GTCTGTGGGG CTGTGAGCAA TGCAGAGGAG GAGGGTTCAG GAGCTCTGTG AATACTCTGG GAGGATCCAG CGGGTTCCAC 002560 002561 AGGGCAGCCC AAGGGCTGGG GCGCTAGGGG TCCCCACGTG AAAGCAGAAG AAGGAAAATA TGCTCAATGA ACAAAAAAGG 002640 002641 ACCTTTGTTG CTTTCTTGGC TGTAGCCCTC AACACACCCC AGAAGCACCC TGGTTTCTCC AGCAAAAAAT TGGAGTTTCC 002720 002721 CCAACAGGTT AAGAAAGTCA ACTGGGAAAT TCTGAAGATG AAGTGAAAAA GGAAGAATGT CTTTCCCTTT TGGGTTAAAT 002800 002801 AATAAAATAA AAATAAAGTG AAAAAAAAAA AAAAA |
Predicted Small Protein
Name | NONHSAT028516_smProtein_788:982 |
Length | 65 |
Molecular weight | 7366.5116 |
Aromaticity | 0.109375 |
Instability index | 53.6765625 |
Isoelectric point | 8.84197998047 |
Runs | 10 |
Runs residual | 0.00765625 |
Runs probability | 0.0478007419185 |
Amino acid sequence | MVLCFHMQGHRGLSMGVIQGKVRLFRPQTWDSPGSSQSREPFVPPPIPRETGETLWPLCL YYLH |
Secondary structure | LEEEEELLLLLLLEEEEEELEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHH EEEL |
PRMN | - |
PiMo | - |