NONHSAT033622

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT033622

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3508 nt

Genomic location

chr13+:46626983..46675482

Exon number

4

Exons

46626983..46627100,46668988..46669137,46671245..46671534,46672533..46675482

Genome context

Sequence
000001 ATGCGAGCGG TAAGAGTGCG GCGGGACTTG GAAATCGAAT CTGTGCTCTG TGAGAGATCC TAGGAAAGGA AACTGGGAGC 000080
000081 CCGGGAGAAC TAAAATTCCC AATTAAAAGT GAATTTAAAT CTGAGCTGTT CTTAGACCCA GAATTTCTTG CCTGAAGGAG 000160
000161 GAATCAGGTC CCCACAAGGA AAGACCCTGC AACTGTATAA AAAAAGAATC TAAAAAGATC ATGACTCCTT CAGTCCTTTC 000240
000241 CCAAAGAGAC CTATGGAAAT TTCCTCAGGA GCACCCACAA CAGAATAGAC ATTAAACAGC TGCATAAACA AATGACTCAG 000320
000321 CCAGTTGATG TCAGTCAGCC TGTGTCAACA GCCACCCCAA TGCTGGCACA AAAGGCACTA GAACAGAATA GCCTGATGGC 000400
000401 AGAGATGAAG TGTGCATGGC TCCAGCAGCA CGGACTCCTC TCATTAAGGC TGATCTAGCT ACTGTTGCTG CCCCATGTCT 000480
000481 AACTTGCCAG CAACGGAGAC CAAAGTTGAG CCCCGGAATC AGCACCATTC CTCATAGAGA CCAGCTAGTC ACTGGGTGGA 000560
000561 AGAGGGACCA AGCAAAACCC CAGAAGAGTT GATCTCAAAG CTTATTTTAT GAAGAAAATT GACCTGAGTG ACACAAAGGG 000640
000641 TTGGACTGTA GTAGATGTCA CGTTTTGCTG CCTAGATCTC CATCCAGGGA TGAACTCTTA TTTCCTCAGC TTCTTTGTCT 000720
000721 CCTCAGCTTC TGGGAGGGTT GGCAGCTGAT ATTCTCACCT GAGTCCCTTT CTAGGACTTG CCCTTGCCTG AAGAGAGCTG 000800
000801 TGCTGCCCAA CATGATGCCT CCTCCAAGGT ACAATCCACA CCCAGTGACT AATAAACAGG GGTTACAAAG GCATGCCTGC 000880
000881 TTGCCCCAGT TTGGGACAAC TTTACCAGGC CAACCCAGCC TCAAGGCTCT CCACAGGAAC AGGTGAGGCC ATAGTTGTGA 000960
000961 TTACATCACA GGTCAGTTTC TCCTCTGCCC AAGCCTTCTT CCTTCATTCC TCCACAGATG CTGATCCTGA GATTCCTTTC 001040
001041 CAGTAAACTT CCTCCATGCA ATCTTCATCT CAGGAGTCTG TTTCCTGGGG AAACTAACCT GCAACTGATA CAAATGCCTA 001120
001121 TTCTGTGAGA TAAAACACTA AAAGTACAAT GCGAGTGGTA TAAATATTCT GCTACAGGAA TACAAAGTCA GGTATCATTT 001200
001201 TTGACTTAGG TAGTCAGAGA ATGGAGATAT TCTGAGTTGG ACTTCTGAGA TACTAGGATT CAATAGGTGA AGGGAAGATG 001280
001281 AGATGGTATA AGACTAACAT AGGCAGAATT TTGCTAAACG AATTGGAGAT GAAACATCAT AAGTGCAGGT GCACAAGTAG 001360
001361 AAAAGTAAAA TCAGAGCTCA AGGAAGGAGA AGTGATCCAG CTGGGCAGAA ATATGGGGCC TATATAGAGA TATACCAGGA 001440
001441 AATAAAGCCA GGACGAATGG CAGGGTAGGA CCTGATTGTT AAGGGTCTTA AATGCTGGGG TCAAGATTGT GGCCCTTACT 001520
001521 TAAAAGTTGG TTGGGCATGA TTTTGGGAGT TGTAGCAAAA GATGTGGCAA ACTCAAAGCT TCCTTTTCAT GTAAAGTATA 001600
001601 GAGAAGTGGA GGTTCATATC ATTAAATCAC TGTAATTTCA GTGTGAACTT CTAACAATTT GAGCTAACCA TGAGATAGGA 001680
001681 CACCTTATCA AGCAATGAGC TCTTCATTAT CTAAAGAGAT GCTGAATTTC AAGTCCATGT AGAGGAAGTC TTGTGTTGAC 001760
001761 TAGAGCATAA TATGTCTGGG GGGACTTTTC TTCTTTTTTA CTGATATTTA GTAACTTGGA TATTGTGCTA AGTGCTTTAC 001840
001841 AGGTATTCTT ATTTAATCCT CACAAGGCAG TATGGTAGAT AATCTATTAT ATTGAAAATA ATGGGCCAGG CACAGTGGCT 001920
001921 CACGCCTGTA ATCCCAGCAC TTTGGGAGGC TGAGGTGGGT GGATCACCTG AGGTCAGGAG TTCAAGACCA GCCTGACCAA 002000
002001 CATGGTGAAA CCCTGTCTTT ACTAAAAATA CAAAAATAAG CGTGGCATAG TAGCTCACAC CTGTAGTCCC AGCTACTCAG 002080
002081 AAGGCTGAAG CACGAGAATC ACTTGAACCC ACGAGGTGGA GGTTACAGTG AGCCAAAATC ACACCACTGG ACTCCAGCCT 002160
002161 GGGTAAGAGA GCATGACTAG GTCTCAAAAG AAAGAAAGAA AATAATGAAC AAAAAATGTT GAGTGGGCAG TATTAAATTA 002240
002241 AAAAAAAACC TAATGTATTA AAGAAGGAGA AAAGTATAAA AATTAGTCAA CAAGCAGAGA AAGAAAGAAA ATATAAAGGT 002320
002321 AAAAATGTAT GTTATCCAAA TGAGACCTCT TAAGAAGAAA AAATAAAGGA AATTCAAAAA ATAAGTTAGG AAATAGTGAG 002400
002401 TAAAATTATG AAGTTAAAAA TTCACCAAAA ATTTATTGAT ATGTCCAAGT TCAGCTTGTA GTGAACAGAC TCTTCTTATG 002480
002481 CAGAATTTGA GCAAAGTGCT AACACAACAG AGTTAGGTAA TGGGATGAGG GTCAGTCAGA TCACTCTATT TTTGGAAACT 002560
002561 GGTTTCATGA CTGCTTCCCC TTACTTAGTC ATAAACAGGC TATATAAAAA GCTGTCAGAG TGGAAAGAGG GAGAGGATTT 002640
002641 GTGAATTTTT TTTTTTAGCA TGTTTTTATG GTTCTGTAAG TCACCACCCT CCCAAAGGGA TGAAGTTTCG GGGTGCACTC 002720
002721 CCCTTACCTC AGCCTAGTAG GGGGACTTCC AGGAGATAAT GAGAGAGTTG GATGTTTCCT CAAATTTACA GACACAAAGA 002800
002801 CTGGTGCCTG GCTTCTCCTG ATAAAGCTAA ACCTGCATGT GGCTGGTCTC TAGTTGGCTA GATAGTAGTA GTTAAAATGA 002880
002881 AAAGAAACAC TTAATGTTAG ATGCCATCCA ATAGGGCCAC CTAAAGGGAT GGAAGGTTCT CAACAACAAG AGCCCAGAGG 002960
002961 TAGAAGCAAG ACTCTTAGCG GGGAAGGATG GAGTCGCAAG TGAAAACCTA GACAAAGAAG CATCTGTCCT GGTCCAGAGG 003040
003041 CTTCCCCAAT AAAGATGTCT CACACAACTC TAAGAAGTTA GAACTCGAGA AAAAGACTAA CAAGAAAAAG AGTAAGGTGT 003120
003121 GTTTGTGGAA GAGGTGAGGC AGTTGTTTTC CTATAAATAA TGTTAAATTA AACTAAATTT GGTCTGAGGA TGCCTCGTAA 003200
003201 CTTGAGTCGC TACATAACAA ACTGCAACCT AACTTAGGAG TATTTTTTTT TTGTACTAAC GAGGTGAGTC TCAGCCAATC 003280
003281 ACAGCAGCCA AGCTACAGCC AATCCCATGT GGCCAACTGA TCAGCCTATG CCCAGTAAGA CAACTGCTCA CCTGTAACTA 003360
003361 CTCAAGCTGC TTCTGGACCT CATTTCCATT TGCTGTTTAT AAGTGCTGCC TGCCCACTTT GCTGAGCAGA ACTCTCTGAA 003440
003441 CTTCTTTCGT TTTTGAGGGT TACTTGATTA GAAAATTGTT CTTTGTTCAA TTAAATTTTG CTAAATAT
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Predicted Small Protein

Name NONHSAT033622_smProtein_872:1045
Length 58
Molecular weight 5972.5817
Aromaticity 0.0877192982456
Instability index 50.9771929825
Isoelectric point 4.30767822266
Runs 7
Runs residual 0.0311403508772
Runs probability 0.0458021046257
Amino acid sequence MPACPSLGQLYQANPASRLSTGTGEAIVVITSQVSFSSAQAFFLHSSTDADPEIPFQ
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEELLLLLHHHHEEHHHLLLLLLLLLLL
PRMN -
PiMo -