NONHSAT051872
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT051872 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2162 nt |
Genomic location |
chr16+:783055..785525 |
Exon number |
2 |
Exons |
783055..783159,783469..785525 |
Genome context |
|
Sequence |
000001 ATTTCAGAGC CAACAAGGAG GTATTACTGA GCGCCACCTG GCTGCAGGTC CCCAAGACAG GCCAGCTGCA AATGGGCCCA 000080
000081 CCTGGCTCCA AGGGGAGAGA CGAAGTAAGG TGGCTGAGAC GGGACCTGGA ACTCAGCCAT CCTGCAGCCA GGCCGGACCC 000160 000161 CGAGGGACAG TGAGCCTCAC TCCATTTCCC AGCAAGCCTC CTGCCGGCTC TGCGGATGTG TCCCTGGACA GGACGGGCCC 000240 000241 TGGCTGTGAC AGAAAATGAC ACTGACCCAT TCCCAGTGTG CCTGCGCTCC CTAACAGCCA AGTCCAGCGG AGGAGAAGTG 000320 000321 GCCTTCCCAC GGCTCGGGCC GTCTCACTGC ACAGCAGCCG GGGAAACGGA TGTCACGGGG GAACCAACCA GCTCCAGCCC 000400 000401 CGGGTGAAAA TCCGCGTGCA GTCAGGCAAG AGGTGCCGCA GGGGACATGG GCGCTCGAGG CCCAGGCACC ACCGGGGCCG 000480 000481 CCCTCGCCCT CTCCCGCCCC ACGCTGGCTG AGTGTCTTCA GGCTTCTATC CCGCTGGGCC TCAGGTGGGG GTCGTGCTGG 000560 000561 GCATCCTCGT GGACCTGGTG GCCGGAGGGG TGGGCTCCAG GCCCGGACTG CCCAGGGCCT CCTGCTCCCT CAGCCTCAGG 000640 000641 CCTGGCTGCC TCTGGGTGAG CAGTGAGCAC CTCTGGATCA GAACGAAGCC CTCTGCTGCA GAAGAGGAAG GGCCTGAACC 000720 000721 AGGAGGGAAC AAGGGTGGAG GTGTGCTGGG GAAGGCCGCA CAGCACAGCG AGGACTCTGT TTCCTGCAGC CTCATGGCAA 000800 000801 GAGGCCAGCA AAGTCACTTC TGGCCGCTCC CCAGCCTGAG TCTGGGGCTG GCCCAACGCC GTTACCTGCT GCTGGGCGAA 000880 000881 GAAGTCCTTG ACCAGGGAGC CCATGACCTG CTGCGGGGAC CGGGCGGTGC TGATGTGGGG GAGGACGAAG CTGCCGTGAG 000960 000961 TCTTCTCGGC ATAGCAGATC CAGCCTGAGG TGACAGGGGG CACACGGGGC TGGCGGGGGC ACACGGCGGC CCCCGCACCC 001040 001041 ACAGGCAGCA GCACGACATT CTGGGGGCGG GCCCGCTCAT ACAGGAGATC ATGATGACAT TAAAGAGTGC TCATTCCTGT 001120 001121 TCTCCCCACC ACCACGCGGA GCTCGGCGTG CAGGCGACAC CGCCTAGGGA CCTGAGGTGA CTGCGCGTGG CTCCCACGGG 001200 001201 AGGGCAGCCT CTTCTCCAGA AAAGGCCATT TGTGCCAACA TTTCCAACCC GTCCCGCAAA ACCTGCTTGC GTCTCCACCC 001280 001281 CCCATGCCCC CGCCTTGTCA TTTGTGTCCA TATCACCTCA CGTTTCAACT GCACTTGAAC TTGACTCTCC CACCACCCGC 001360 001361 ACCATGAGCA CACCTGGGCA GGCAGAGGCC AGCAGGGGCA GCGCCTGTCT GCAGTCGGCC TGTCCTCGGA ATCGCCGCAC 001440 001441 AAACTCTCGC TGGCTCTCCA GGAGGCTGAA GTGCCTTGAG AAGGCGGTGT CGAAGACGAA GTGCACCCCT GGAAGGTGAA 001520 001521 GGTGGGTGCC TGGTTAACCC CATGCGGGAC GCCCACGCGA GCACACGCCG GCGTGTGGAC CACCATGGTG CTGCCAGGGC 001600 001601 ACGTGTGTCG CACCTGCTTG CCGTGCCAAA GCCCCGGCCC CACCGTGGGG ACCTCCTAAA GCCACGTTGC GCCAAAGCCC 001680 001681 CAGCCCCACT GTGGGGACCT CCTAAAGCCA CGTTGCCTCG GCATCCCCTG TGAACCCAGG CCTTGGTTTC CCACCCCAGA 001760 001761 GGCAGCCACC CAGCAGCTCA GTCCTCCACC CTCCCAGCTC TTCAGCGTGG CTGGTCCAGG GAATTGCCAC GTGCGCTGCT 001840 001841 CCCGGTGACC CTCCCTAGGG CACAGCTGGA CGCAGCCTGC TGGACTGGCC CCTCGGACCC TGACTGTGCA GACCTACCAT 001920 001921 AGTGGCCACC CCTCACACAC AGCAGGACTC CTGGAACACG CCAGCCAGCT CCAAGCCCAG CCATTAGAAC TGCTCAGTAA 002000 002001 ACCTGCCTGA TCGTGCCCTG GACCCAGCAG AGGCACCCGC GTGTGGGTCC CTCTCTCTCT GCCTGACTTG TCATTCCTCC 002080 002081 CTCGCGTAAC CCGTGGTCGG AGGACTCGCT GTGCCCCACT TGCCCGTCAT CATCATCTCT AAGTAAAAAT CTTTGAACTT 002160 002161 GC |
Predicted Small Protein
Name | NONHSAT051872_smProtein_446:658 |
Length | 71 |
Molecular weight | 7003.847 |
Aromaticity | 0.0857142857143 |
Instability index | 53.9028571429 |
Isoelectric point | 5.93072509766 |
Runs | 7 |
Runs residual | 0.0448373408769 |
Runs probability | 0.0307366189719 |
Amino acid sequence | MGARGPGTTGAALALSRPTLAECLQASIPLGLRWGSCWASSWTWWPEGWAPGPDCPGPPA PSASGLAASG |
Secondary structure | LLLLLLLLHHHHHHLLLLHHHHHHHHLLLLLLLLLLLLLLLLEELLLLLLLLLLLLLLLL LLLLLLLLLL |
PRMN | - |
PiMo | - |