NONHSAT053180
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053180 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3239 nt |
Genomic location |
chr17+:34439685..34454720 |
Exon number |
4 |
Exons |
34439685..34442216,34443949..34444020,34452978..34453058,34454167..34454720 |
Genome context |
|
Sequence |
000001 TAGAAAAACA GACACAAGCT TTTATCATGC AAGTGGCTGA CCTGCAACAA AAGGGGCATG CACAGCCTCA CCAGGTGTCT 000080
000081 ATTGTTAAAG TGGGGGCATT GATTGGAAAA GAATAGGACC CTGCAACTTG GAATGGGGAA ATGTGGGAGC ACCCAGATGA 000160 000161 AGCTGGGGAC ACTGAGTTTG TAAACTCTGA TGAACCTTTT TTGCCAGAAG GAACAGCTTC CCAATCCCCA GTAGTGGCAA 000240 000241 CATCCGCTCC CTGACCCATG CTGCCATCAG CCTTTCCACC TTTGTCCACA GATAAACCCT GTGCTGCCTG AGGCAACAGT 000320 000321 GATGGCCTCC CCTGAGGCAG TTGCCAGGCA AAGTAATGTT GATTCCCCTC AGGAGCCACA CCCAACACCC CTGTTTGCTG 000400 000401 GCCCACTACA TTGATGACAG TCTAGACATG TAACTACACT AAATTCTGGT CCATTACACT GATGACAGTC TAGACCTGTA 000480 000481 ACTAAAGTCC CAGTGGGCCC CTGGAAGTGA GATTGAGAGT GTGACCCATG AGGAGGTGCA TGGCACTTCA AAAGAACTGT 000560 000561 TTGAGTTCTC TAATTTATAA AAACAGCAAT CTGGAGAACA GGCATGGGAA TGGATGTTAA GGGTATGGGG TAATGGTGGA 000640 000641 AGGAACATAG AGTTGGATCA GGCTGAATTT ATTGATTTGG GCCCACTAAG TAGGGATTCT GCATTTAATG TTGCAGATTG 000720 000721 GGGAGTTACA AAAGATTCTA ATAGTTTATT TGCTTGGTTA GCTGAAATAT GGAATAAAAG ATGGCCCACT GTGAGCCAGC 000800 000801 TGGAAATGCC TGATCTCTCC TGGTTTAATG TAGAGGAAGG GATCCAAAGG CTTAGGGAGA TTGGGATGGT GGAGTGGATT 000880 000881 AGTCACTTTA GACCTAATCA TCCCAGTGGG AAGGGTCCAG AAATTAACAT GTCTCCTGGT GCCTGGTATG CACCAATTGA 000960 000961 CTTGGCAAAT GCTTTTTCTC CATTCCTGTC CATAAGGCCC ACCAGAAGCA ATTTGCTTTC AACTGGCAAG GCCAGCAATA 001040 001041 TACCTTTACT GTCCTACCTC AGGGGTATAT CAACTCTCCG GTTTTGTGTC ATAATCTTAT TCAGAGAGAC CTTGAACACT 001120 001121 TTTTGCTTCT GCAAGATATC ACACTGGTCC ATTACAATGA TGACATTATG ATGACTAGAT CCAGTGAACA AGAAGTAGCA 001200 001201 AACACACTGG ACTTATTGGT GAGACATTTG CATGCCAGAG GATGGGAAAT AAATCTGACT AAAATTCAGG GAACTTCTAC 001280 001281 CTCAGTAAAA TTTCTAGGGG TCCAGTGGTG TGGGGCCTGT CGAGATATTC CTTCTAAGGT AAAGGATAAG TTGCTGCATT 001360 001361 TGGCCCCTCC TACAACCGAG AAAGAGGCAC AAAGCCTAGT GGGCCTGTTT GGATTTTGGA GGCAACACAT TTGGGAGTGT 001440 001441 TACTCTGGCC CATTTATTGA GTGACCCGAA AGGCTGCCAG TTCTGAGTGG GATCCAGAAC AGGAGAAGGC TCTGCAATAG 001520 001521 GTCCAGGCTG CTGTGCAAGC TGCTCTGCCA CTTGGACCAT ATGACACAGC AAATCCAATG GTGCTTGAGG TGTCAGTGGT 001600 001601 AGATAAGGAT GCTGTTTGGA GCCTTTGGCA GGTTCCCATA GGTGAATCAC AGCAGAGGCC TCCAGGATTT TGGAGCAAGT 001680 001681 CCCTGCCATC TTGTTCAGAT AACTACTCTC CTTTTGAGAG ACAGCTCTTG GCCTGTTACT GGGCTTTGGT GGAAACTGAA 001760 001761 CGTTTGACTA TGGGTCATCA AGTCACCATG TGACCTGAAC TACCTGTCAT GAACTGGGTG TTTTCCAACC CATCTAGCCA 001840 001841 CAAAGTGGGT CATGCACAGC AGCATTCCAT CATCAAATGG AAGTGGTATA TATGTGATCA GGCTTGAGCA GGTCCTGAAG 001920 001921 GCCAAGTAAG TTACATGAGG ACATGGCTCA AATGCCCATG GTCTCCACTC CTGCCACCCT GCCTTCTCTC CCCCAGCCTG 002000 002001 CACCGATGGG CCTATGATCA GTTGACAGAG TAAAAGAAGA CTAGGGCCAG GTTCACAGAT GGTTCCACAC GATATGCAGG 002080 002081 CGCCACCAGA AAGTGGACAG CTGCAGCACT ACAGCCCCTT TCTAGGACAT CCCTGAAGGA GAGCAGTGAA GGGAAATGTT 002160 002161 CCCAGTGGGC AGAACTTCGA GCAGTGCACT TTACATGAAA TGAGAAATGG TCAGGTGTGC GATTATATAC TGATTCATGG 002240 002241 GCTGTAGCCA ATGACTTGGC TGGATGGTCA GGGACTTGGA AGAAGAATGA TTGGAAAATT GGTGACAAAG AAATTTGAGG 002320 002321 AAGAAGTATG TAGATGGACC TCTCCGAGTG GTCAAAAACT GTGAAGATAT TTGTGTCCCC TGTGAGTGCT CACCAACAGG 002400 002401 TGACCTCAGT GGAGGAGGAG TTTAATAATC AAGTGGATAG GATGACCCAT TCTGTGGACA CTACTCAGCC TCTTTCCCCA 002480 002481 GCCACCCCTG TCATCGCCCA ATAGACCCAT GAACAAAGTG GCCATGGTGG CAATGGAACA ACAAATGCAA TAACAAGGAT 002560 002561 TGCCCAAATG ATCAGGGCCT TAGGCTTCTA GCCTTTATCC TGAATTGCAT TTGGCAGGTC CCAAGTTCTT GTCCCACATC 002640 002641 CAAGAAGAAT GAGGTTATGC TGACAACCAA AGGATGAGGA GAGTTAGGCT TGTGTGGAAC ATTTAGTGTT CTTCTCTTGT 002720 002721 TATTTTGTTC ACTCTTTAGC TCACTGAAGC AGCATTTCCT CTAGGAACCT CTGAGTACAA AGCAGAGGTC AGAGACCACC 002800 002801 AGGCATCAGG GTAGACTCTG TCTCTCAACC TTCTAGGCCC TCAGCCAGCT TGCAACCTTT GAACACCCAT CTTCTCAGGG 002880 002881 AGTGACTTCA CTACCCACCT GTTACTGCCC CTGCAGTTAA GCGGCAGCCC GAATTTCATA CCTGCATAGG GATCTCAGCT 002960 002961 GGGGGGTTGG TCAGCGGCTT CCAAGCACAC TTTCAACATC TCTCCCAGAA GCTCTTCAAA TCCTCTTGTC ACTGAACCTC 003040 003041 CAGGAGGCCC CAGATGGCCC CCAGCACACT ACACCTGGCT TCATAGCTTA CGCATTCACT CTGATTTTCT AAATGACACA 003120 003121 GAGACGATTC ATTTCTTTGG CCACTTTTCC TAAAGGTACC AGGAACATCC ATGCCTTGTT GGGATTAGCA AAGTGCTAAA 003200 003201 AAGTGTTCTT AAATGTCTCA TGTTTGGCGA TTACATCTC |
Predicted Small Protein
Name | NONHSAT053180_smProtein_1577:1792 |
Length | 72 |
Molecular weight | 8159.247 |
Aromaticity | 0.112676056338 |
Instability index | 48.7309859155 |
Isoelectric point | 4.79486083984 |
Runs | 12 |
Runs residual | 0.0204595997035 |
Runs probability | 0.033555614438 |
Amino acid sequence | MVLEVSVVDKDAVWSLWQVPIGESQQRPPGFWSKSLPSCSDNYSPFERQLLACYWALVET ERLTMGHQVTM |
Secondary structure | LEEEEEEELLHHHEEEEEELLLLLLLLLLLLEELLLLLLLLLLLHHHHHHHHHHHHHHHH HHHHLLLEEEL |
PRMN | - |
PiMo | - |