NONHSAT053418
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053418 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1556 nt |
Genomic location |
chr17+:37330081..37340614 |
Exon number |
3 |
Exons |
37330081..37331375,37333457..37333588,37340486..37340614 |
Genome context |
|
Sequence |
000001 TGGCAAAATA CTTCTCCTAG GGGAGTACAG ACAAATATAG ACAGACAGAT GGGGGCACAG GACACCAGAC AGGGAGGGGG 000080
000081 GAAGGGAGGG CAGTGGTGTC TTCTAATCAG TAAGTGGAAG CTGCACCCCA CCCCCAGGTG GAGGGTGGGA CATTGGCACA 000160 000161 GGAGGTGGCG AGACAGGCAT GAGGTGCCCA TCCCTGAGGC GGGCAGCCGG GCAGGCCCCA GTCCTTGTTG GCACACTCGG 000240 000241 CTCTCTCTGG CCCAGCTGGG ATGCTGGGGA GGGGCAGGGT TGCTGGGCTA CAGGGATGCC AAGGCAAAGG GATGCCCCAG 000320 000321 GGGAGAGGGG GTACCAAGGC CTCTCCTGGG GGAAGTGAAC ATGGGTAACA AACAGAATCA CGAGAGGCAA ATACAGAGCA 000400 000401 GCAACAGCAG CAGCCAAGCC CCCCAGAGGA GATCCGAGGT CCCAAGGCAA CCCCTGGGCA CCATCCCACG GGTCCTCTCC 000480 000481 CCTGGGGCCT CAGGGTGAGG GTGAAGGAGC AGTTTTTTGG TTTAAAATGA GGCGGACCAG AGTGTTCCAT GGGCTCCACA 000560 000561 CCCAGGTGGC ACAGGGATGG GGGGCTCAGA TGCAGAGGGG CCCCCTCTAC TAATGGCAGC AGGCAAGGGA TGTTGGAGGC 000640 000641 CAAGCTCATT CCTGGGGTAG GCAAAGGCTG AGGCATGGAG GTGGGGGGTG GGGAGCAGCG TCTCGGCCGC TCACTCCTCA 000720 000721 GGGTTCTGGG CCCTGGACGT TGCCATGGCC ACGGAGGGTA GAGGGTGCTG TATGCCTGCC AGCTTCCACC CAGAACCCTC 000800 000801 CCCAAGACAA GCTCCCCATG GGGTGTCCAT GCTATGGCTT TCACCGACCA GACGATGCTG CCAGGAAGCT GGGAGGAAGG 000880 000881 GGCAGGCAGG GTGAGGGACC TTGGATCTGG GGTCTGGGGA AGAGAGCCCC CATGGGAAAG AATCTGTGGC CTCCCTTTCC 000960 000961 AGGAAAAGCG CCCAGCCCTT CCCCAGTACT GCAGCTTGGG AGAAGGAGAG CCATCCCACT TAGGACCGTC ACTTAGGGCC 001040 001041 CCGAGTAGAA AGAGTTAAGG AAGTGCACCT TTTCTCTAGG AGGGTGAGGG AGGAGAGCCC CTTAAGATGG GAGAAAGGGG 001120 001121 ACACTTCAGA AAGGTGGGTA TCCCCCATCC ATCCACAACA GGCAGGTAAA AACCGACAGC TGGGGCTTAA GGGCCTCCCG 001200 001201 GGAGCTGGGA TGGTAACACC AAAGAAACCC CAAGCTTTGA GCAAAGGCAT CTGAAAGGAG GGAGACAGCG CCCCCTGGAG 001280 001281 GCGAATACAT GTCAGTTCCG ACCCCAGAGC AGGAGGGAAG ACGGGCAGGG CGCCCACTAC ATGGCATGTT CCTGCTCCTG 001360 001361 GGGCACCACA CTGCCCCGCT GTGAGGACTC CAGCCCGCCC CAGAAGCCGA GGTTTCTCCT GAGCGAGTCC GAGTCCCAGG 001440 001441 ATTGTGATTC GAGGCATCCT GCCCATCCCC AGCAGCAGAG AGCAACGGCA GGTGCGAGGA GCAGCTCCCA GGATCTTACC 001520 001521 TGCCATCAAA CCGATGCTTC AAGAAGTCAA ATAAAG |
Predicted Small Protein
Name | NONHSAT053418_smProtein_833:1057 |
Length | 75 |
Molecular weight | 8152.1209 |
Aromaticity | 0.0810810810811 |
Instability index | 58.5945945946 |
Isoelectric point | 6.55450439453 |
Runs | 7 |
Runs residual | 0.0480553724456 |
Runs probability | 0.0110025992379 |
Amino acid sequence | MAFTDQTMLPGSWEEGAGRVRDLGSGVWGREPPWERICGLPFQEKRPALPQYCSLGEGEP SHLGPSLRAPSRKS |
Secondary structure | LLLLLLLLLLLLHHHLLLEEELLLLLLLLLLLLLLEEELLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |