NONHSAT054475
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054475 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1819 nt |
Genomic location |
chr17+:46830277..46832095 |
Exon number |
1 |
Exons |
46830277..46832095 |
Genome context |
|
Sequence |
000001 GGCAGAGCCG GGGTGCCGGG TGGGGGCAGG CTCGGGGGCC TGCCTGCGGT GAATCAGGCT TGTGACCTCA GGCCGTCCAG 000080
000081 GTAAACATCC TCTGCGCTTT GGAAACTGTT GGGACTAGAA AGGAGCGGGC GGCAGGGAGA GGGAAGGGGG AAGGAGGGAT 000160 000161 TCTGAGTGGA GGAGACCTCT GAAATCCTCT CTCCTGCCAG GAAACCAGGG CGGTCTTCCA AGCGGGCAGC CACGTTGCCT 000240 000241 ACTTGAGGCC AAGGCAGAAG CATCAATCAC ATGGGGCGTA GTTTCTGTCT GGCTAAAGAA CGGCTCACGC GGACCTCGGG 000320 000321 AATGCGACTG TGGAAACGAC GGGGAAGCTG GAAGGGCTGG GTGGCGGGGG AAGCTGGAGG GCACAGCTTC CAGATTCCAG 000400 000401 TTTGTTAAGA ATCACCTGAA GGACGTTTCT CTGAAGGGAA AGTGGGCATC TGTGAAGGGT TAGAGGCACA TACTTCAACT 000480 000481 TTCCCTAGCA CAAGAGTGGA AATCCATACT CCTTGGGGAG GGACTTTGTC ACTGAACCTT AAGAAAATGG TTACTGgact 000560 000561 gagcttggtt acttatgcct gtaatcctga cgttttggta gatggaagtg ggagcatcga ttgaggccag gagttctagc 000640 000641 ctaggcaatg tagtgagact ctcatcgaaa agaaaataaa aaaAAGAAGA AAGAATCTCG TGGCTGTCAT TTTTAATGTT 000720 000721 GCTGGTGTGC AGGGAGGCTG TTTTGACTCT TATTTCCATT CTTGGGCCAC CGGCagagca gggcaaagct atgaggttac 000800 000801 atagacctgg cttagacccc agtcccattc cccagcagct tcaggcccaa gcaacggtct ccatctccct gaacacagtc 000880 000881 tccttatagg taaaataact gcagagttga tgctggaatt aaatcaatgc aGTGGCGAGC CCAGCGCTGC AGAGCCCCGT 000960 000961 GCTTAGTGAC CAAAATAATG TCCCGCCTGC CTCATCTTCC TCTCGGATTT TTGCCAAGGC CAAACTGCGC GTGTCCCAGA 001040 001041 AAAAAACCCT CGGACACTTG GCCTCTGCCC TGTCTCAGCC GAGTGACTAG GATGACTGGG AAGTGAATCA CAGGAAAATC 001120 001121 ACCCAAGCCC ACTCTTCTCC ACAGCCGGTG AGCAgaagga aggaagcaaa gaaggaaggg aggaagggaa gaagggagAG 001200 001201 TTCAGTTCCC TTTCGTCGTT CACACAGTGG TCCTCCACAC CAGGAAACCT AAGGGCTCTG TGGAGGGCCA GGTGCCGTGG 001280 001281 CAGCAACACT CCTCAGGGCC TGTTTCAGCA CCCCATTTAC GTGGCACATG AAAAATTCAG GATGAACGCC CTGGCTGAAA 001360 001361 GCTCTTCCTG GGTTTGGGAC ATCAGAAGAC CTTCCCGGGA TGGGCTCTTG TCTCTGCAGT AGCTATGACC TGCACATAAA 001440 001441 CCTGTTTCCT ACACTGTAAA ATTGGCGTAA CCACCATTCC CTCCCAGTCT TTCTCTGGAG TCCTAATGGG AACAGTGACG 001520 001521 GAATGAAAGT GACCACGCTG GAACCCGAAG CGCTGTTCCC CTCCGTGGCT TCACACTGAT CTCCACACTA GAATTCCGTG 001600 001601 TCTGCAGTTC AAGTTCAAAC TACTGTGGTC GGGGAAGGGC TACAGAGATC TCGCTTGGCC GTGGAGTCAC CGGCCCCGTC 001680 001681 CAGTCTTGCT TGGGACACAT ACTGGTttac actctctcgg gttcagtttc ctcatctgta aatggggctc gtatccccct 001760 001761 cataaagtgg tttgggggat aataaagctt gtaaaagcgc tttgccccag tgcttggca |
Predicted Small Protein
Name | NONHSAT054475_smProtein_926:1105 |
Length | 60 |
Molecular weight | 6802.2173 |
Aromaticity | 0.0508474576271 |
Instability index | 42.9644067797 |
Isoelectric point | 11.2614135742 |
Runs | 7 |
Runs residual | 0.0258124708443 |
Runs probability | 0.0351527998586 |
Amino acid sequence | MQWRAQRCRAPCLVTKIMSRLPHLPLGFLPRPNCACPRKKPSDTWPLPCLSRVTRMTGK |
Secondary structure | LLLHHHLLLLLLHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEELLLL |
PRMN | - |
PiMo | - |