NONHSAT054635

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT054635

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2174 nt

Genomic location

chr17+:48436339..48438512

Exon number

1

Exons

48436339..48438512

Genome context

Sequence
000001 TGTGAACCAG AGGTGCTTTC TCCATCTCTC TGGGGCTATC TTGTTCCTCA TCCTGTCCTG TCTCTATGCA TTGGCCTCAG 000080
000081 GCTCTGGCTC CCCATCCATG GCCTCTCAGT GCAACAGACA CTGACCAGAG ACTTTTAGTC CCCAGGTTTC ACATTCTTGG 000160
000161 GACAGCAAAT CTGATTGGCT ATCCCAGTCC ACTGTCTGGC CAGGTGGGCA GGGTCATGTG GCTCTCTGCC CATTTGGCTG 000240
000241 AGGCTAAGGG AGCAGGCTCT GAACAGAGAC ACAGGCTGGG CAAATTTCCT GCAAGGGAGG GCCTAGTATA AGTAACTCCC 000320
000321 CCTGGGAGCT ATGAGGGATG AGCCTCTGGA GGGAAAGTGG CCGGTATGCA GGAGGTGATC AATTGGTAGG TGTTTCCTTC 000400
000401 CCCCACCACG TCCTATCACA AGAAGGTGGT TAAGAGGTGG GGTACCCTAG AGGAGGAGGG GGTGCTGGTG GGGCTGCAGC 000480
000481 AGATCCAGGG CAGGCAAGCT GTGTCCCCCG CACACCTGGA CCTCCCAGTC AAGGGAAGAA TGGCAACAAT GCACAGCAGG 000560
000561 TAGGGACAGG GGCTGCGCCT CAAGGACAAA GTCAGAGGAG GTGCTCTAAG CCAAGGGGAC AAAGCTGGCC ATTGTCTGTG 000640
000641 CATGAAGAGC TGAAGTGCCC GAGTACAGGC TTCTGAGGGC TCTAGGAGCC ACCAATGATG GTCAAGAAAG GGTATGGGAC 000720
000721 ACAAACCAGA CTGTTCCCTT TTCTAAAGTG CCTTGAACCC ACTGCTTTAC TGCATCCTAA AGTTGGGAAT CTAAGGCTTA 000800
000801 CTGCCTTGAT TTTATAAAAC TCAGTTTTAT AGGCACAGAA AGTCCCTTGG ATTAGCCCAA GGTCATTCAG CAAGCTGTGA 000880
000881 CTCAGAAGTA GGGCTGTGAC AGGAACTGGG GTACCCAGAC CCAACTCCTG GGTCTGGCCT CCACGGAGTC TGTTGCAGGG 000960
000961 GGTGTGCTTA CTGCCTGCTC TGCACCCACA GATGATGCCA GCTGGCTGCA CGCAGGGCCA CCCCACAACG AGTACATGGA 001040
001041 GCAGAGTTTC CAGGGCCTGA GTAGCATCCT GAACCTGCCT CAGCCGGAGC TCGCGGAGGA GGCTGCCCAG CGGCACACAC 001120
001121 AGCTCACAGG CCCTGCGCTC GAGGCCTGGA CAGACAGGGA ACTGAGCAGC TTCTGGTCCG TGGCTGGACT GTGTGCCATA 001200
001201 GGCCCCTCTC CCTGCCCCTC CCTGGAGCCC TGCAGACTGA CCAGCTGGAG CTCTCTGTCC CCCGACCCCA AATCAGAGCT 001280
001281 GGGGCCTGTC AAAGCAGACG GGCGACTCAG GTAGCAGGGC CCCAGCCAGT ACCCGTGGAG GACCCGGGAA ATTGCACCTT 001360
001361 ACAGACAGTG GAGGGGTGTC CCCTCCCACA GGCAAGAACC AGAGGCCCAG GCTGCACACC CATTTCAGCC ATCAAGAACC 001440
001441 CACACAGACG GCAGGGAAGG TGGACACAGT ATGAACTACT GCTGATGTCT CTGTTGGGGA TCAGAGGGCT GGCGGGAACG 001520
001521 CGAGAAGGGC ACCAGCAGCA TTCCACACCC AGCTCTTCCT CACCTTCCTG TCTAGTTTGA Atttcttttt tttctttttt 001600
001601 tttttttttt tttAATTTAA AAAGGAAAAT GGGTGGTTGG GAGAGAAACT AGAACAGAAG ATGTGCAATA GGGCTCAGAG 001680
001681 CAGCCCCAGG AAGTGGGCCA TGTCTGTGGG GAGCAGGGGC TTGCTGAGCC CACCTGCTAT TGTTCTGCAC GAGGCTGGGC 001760
001761 CTGCCTCACT CTCCAGGGCC TCATGCCCCA TTCTGGGCCT GTGGTGCTCG TGGCTGAGGC TCCACAGGGC TGCAAGTGCC 001840
001841 CTGCCAGGCT CTAAGGCCCG AAGAACAGGT GATATCGGGG GCGCTGCAGA GCTGGGCTCT AGCAGGACAG TTCTTTTGTA 001920
001921 GCCAGGGGAC CCTAGAAGTG GGGTGGGGCG GCTCCAGGGC TTTCCAGCAT ACCCTGCCCC TGGATGGGAA AGGCAGGGTC 002000
002001 AGGGCCCACT GAGACCCATG CAGAGTTTCC AGGTGTGCAC TGGAAGTGAG GTCACATGAG CAGCGTGGGA AGAAGACTCT 002080
002081 GTCAAGACTC TCAGAAGAAC CTGGAGTAAT TGTGCCTGAA GCTCAGCGTG AAGTCTGAAA TATGCAACAG AAGAAATATA 002160
002161 TCTCTATCTC TCTA
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Predicted Small Protein

Name NONHSAT054635_smProtein_65:310
Length 82
Molecular weight 8899.1534
Aromaticity 0.0740740740741
Instability index 42.5012345679
Isoelectric point 10.2367553711
Runs 11
Runs residual 0.00637723816532
Runs probability 0.0428208957622
Amino acid sequence MHWPQALAPHPWPLSATDTDQRLLVPRFHILGTANLIGYPSPLSGQVGRVMWLSAHLAEA
KGAGSEQRHRLGKFPAREGLV
Secondary structure LLLLLLLLLLLLLLLLLLLLLEEELLLEEEEELLLEEELLLLLLLLHHHHHHHHHHHHHH
HLLLLHHHHHLLLLLLLLLLL
PRMN -
PiMo -