NONHSAT055739
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT055739 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1549 nt |
Genomic location |
chr17-:71745409..71824676 |
Exon number |
4 |
Exons |
71745409..71746637,71757074..71757165,71819827..71819964,71824587..71824676 |
Genome context |
|
Sequence |
000001 AAAAAGCTCT GGAAATAGAT CATCAGGATG GTTGCACAAT GTTTTGAATG TAAATGCCAC TGAATTGTAC ACCTTAAAAG 000080
000081 GGCTCAAATG ACGTCATCAG CACCCACCCT CCCAGATGTG ACAATCAGAA ATGTGTCCAG ACATATCCAG ATGTCCCTTA 000160 000161 TGGGGAAGGG AGAATCGCCC TGGCTTTGCA GACTCCAGCT GGAACCCCTG CTGCAAGCGA TGGAGGAGCA ACAGCTCGGC 000240 000241 AATCTGGAGG CAAGGTGGGA GGTGGAGAAG CACGGAAACG AAGTCTCTGG CTCAACCAGC AAAAGTGAAC CACTCCCCAG 000320 000321 CAGTGGAAAC CGGGGCTTCC TAGAAGAAAC GATGCACTCC CCACCTCCCT CTGTTTGTGC TGCAGTGAAA ACTGACACGA 000400 000401 GAGATTCATT GGAACATGTG CCCTCGTTCC ACTCTCATCA GCCCACCGCA GGGACAGGAG CTGTTCATCT TTTTGGCTGT 000480 000481 GCTCGCAGCC TCCAGAACAC TTATGAGGGG CACCTTGTGG GCGCCGTGGT CGGATGAGGC CCCTGGGGCT CTTCCAGAGG 000560 000561 CTGGCACTCT CTGCAGTTGT CGCTCACATA CCTGCTCAGG CCAGGCCAGG CCAGAGTGGA CAATGTCTTC CCAGCAGGCC 000640 000641 AGACCAGTCT CCCAGGAGGC TGAGGCTGCT GTATCACTCA CCAAACCCTC TCATCTGCCG GCCTGACCCT GTGCTATGCT 000720 000721 GGAAATAGCA CTCGAGCCAG ACGCCCTCCC TGACTTGGAC AAGGGCAGTG CCCTGGAAGG AGAGGGCACA GAAGCAGCTG 000800 000801 TTTACAGAAC CTCCGAGGGC TGCAATGGGG CAATGGGGTG TGCAGGAGAG TGACCAGGAG CCCGGGGCAG CTGGTGACCC 000880 000881 ACCCCTCCAG GCATTCGTGA GGTGTCAGAA GAGGGGGCCC CTTGAACGGG GCCTGCAGAG ATGGCTAAGA GTCCATCAGG 000960 000961 CAGATGAAAT GATTTGCTTT CTTCACACTT ACCAAGCTTA GAAATGACCT CCTTCATGCA TGTGAATGAC TTTATTCATG 001040 001041 TATATGACTC ACCTTCCTCA TGCATGTGAT GATCTTATTG TATGTGACTC ACTTTCATGC ACGTGATGAC CTTATCCATG 001120 001121 TATGTGACTC ACCTTCATGC ATGTGATGAC CTTATTCATG TAGGTGATTC ACCTTCTTCA TGCATGTGAT GACCCTATCC 001200 001201 ATGTATGTGA TTCACCTTCT TCATGCATGT GATGACCTTA TTCACGTATG TGATTTGCCT TCTTCATGCA TGTGATTACC 001280 001281 TTATACATGT ATATGACTCA CCTTCATGTA TGTGATGACC TTATTCACAT GTGACTCGCC TTCTTCATGC ATGTGATGAC 001360 001361 CTTATTCACA TGTGACTCGC CTTCATGCAT GTGACGACCT TATCCATGTA TGTGACTCAC CTTCTTCATG CATGTGATGA 001440 001441 CCTTATCCAT GTATGCGACT CACCTTCTTC ATGCATGTGA TGACTTTATC TATGAATGTG ACTCATTGTT TGTCTTCCCA 001520 001521 TCCCCCTAAA ACATAAACTC AATGAGAGC |
Predicted Small Protein
Name | NONHSAT055739_smProtein_533:727 |
Length | 65 |
Molecular weight | 7180.4229 |
Aromaticity | 0.046875 |
Instability index | 83.7359375 |
Isoelectric point | 11.2172241211 |
Runs | 9 |
Runs residual | 0.00796875 |
Runs probability | 0.0435827984849 |
Amino acid sequence | MRPLGLFQRLALSAVVAHIPAQARPGQSGQCLPSRPDQSPRRLRLLYHSPNPLICRPDPV LCWK |
Secondary structure | LLLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLEEEEEELLLLLLEELLLLL EELL |
PRMN | - |
PiMo | - |