NONHSAT056350
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT056350 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4412 nt |
Genomic location |
chr17-:78174029..78178870 |
Exon number |
2 |
Exons |
78174029..78174044,78174473..78178870 |
Genome context |
|
Sequence |
000001 GTGAGGCAGC TCTCGGCCCA GAAGCACGTG CTGGAGCCTG CGGAGGAGAG GATCCTGAGG GTGGGTGAGG CTGCGGCAGC 000080
000081 CCCCAGCCAG CCTACCCTGC CCCGGGAGGG ACTGGGTCTG CTTTGCTCAC TGCAGCAGCC CCAGCACCTA GAATTCCAGG 000160 000161 GGCACAGGCT CAGCGGTCAC AGGACTCACT CCCAGTTCCA TAGCCCCTGG CTGAGCGGCT CCTTTGCACG GGGGTTACAC 000240 000241 AGCTCTGTGG CTCTCCAGGG ACTGCTTTGC AGCCTGCAAC TTAATCCTGT TTCCTATAGG CCCAAGGGAG GATGGCGGAA 000320 000321 GCCAGGGTTT TCTTCCTTCC AAAGGATCTG GGAGAGTGGC ACCCTTCTCC TCAGCCATCC TCCAGGGCAC AGGGTCCTAG 000400 000401 CCCTCCCTCT GTCCTGTACT CCTCTCCTGA AATTTTTTTT TTCCTGAGAC AGAGTTTTGC TCTTATTGCC CAGGCTGGAG 000480 000481 TGCAATGGCA CCATCTCGGC TCACTGCCAC CTCTGCCTCC CGGGTTCAGG CGATTCTCCT GCCTCAGCCT CCCGAGTATC 000560 000561 TGGGATTACA GGTGTGCGCC ACCACACCCA GCCCCATGAT TCTTGAAGAC CAGATCCTGG CCTAAATGAG TGGCATCCCC 000640 000641 CTGCCCCAGC TGACCAACTA GCAGCAGCTC CCAAAGCCCT TCACCCGCTT GGAGCCAGCG GCCCCTGTGC CAGCTCACCA 000720 000721 GGCCTCACCC TCCATCCTGC TGGGGTCCAA CTGGCCCCTG TCAAAGGACA AACGCAGAGG GCTGGCCTTG GCTTTGTCCA 000800 000801 TACTGACGAT GCGGACCAGC TTCTGTGGTC CCCCAGAAGA TGGCTAAAGG AGGGACAGAG AAAGGATGAG GAGGAGCTGT 000880 000881 TGAAGCCATC AACAGGAATG GGAATTCAGG GGAGATGATT GGCACTAGGG CGACCTGGGA GTGATGCAGA GGCGCAGATG 000960 000961 CTCTGAGAAC AGCCTGAGGT GTGTCTGCAC TTGTGCAAGA GCCTGCAGGC TGGGCAGGGG CTGCAGACCC TGCCCTGGTT 001040 001041 TGAAGGGGTG CAGAGGAGAG ACAGGTGGGG TTACCCTCCA ATCAGCAGCC CACTCTCCAC ACAGTGCCTC CTGCCACCCT 001120 001121 GCCAGCACCG AGCCCCTCTT CCAGCCCACC CCAGTGGGGT CCAGGCCCCT CCCTGGAGCC TCACCTTGCG GGTCACGGTG 001200 001201 CACTGCTGAG TCATGTCCTG GATGAGGGCT ATGAGCTGCT GCTGAGCCCT GCAGAGACCA GCAGAGGCCC TGACCCAGCT 001280 001281 GCCTCCTGCC AGGTGAGCAG GGCAGGGGAG AGCCGAGCAG GGGAGAGTGG GGGAGATGGC CGGGTGGGAG AGAAGGGCCT 001360 001361 CCACCTAGAG CTCCACACAT CCCTTTGCTG CAGGCTGGAG CGCTCCATCC TGGCGGCCAT GCCAGTCTCC AGAGCTTTCA 001440 001441 AAAGACTCCA GGGCCTCGGC CCACCCCTGG AGATGCTGAT TTACTTGTCC TGGGGCGGGA CCCAGGGGGT GCTGTTGAGC 001520 001521 AGCCAGCGTA CAGGGCCCCA CTCCAGGACC TCAATATTCA TGGTGGGTCC CTGGCCTGCA GCCTGGAGTC ACCGAGAGAG 001600 001601 CTGTTAGAAA TGCAGAGTGC CAGGCCTCTC CCTGGACCTG CTGGCTCCGA TCCCCAGGGG ACTTGAGTTT GCAATGAGTG 001680 001681 ATGGGGGTGC TGAGCTCAAC ACTCCTGCTT TCTAGCACTG TGCGTTCCGT GCACTTGAAA CTTGGAGCCT CCCATAGGCT 001760 001761 GATCTAGAAC AATGGTTTCC TTTTCTTTTT TTTTTTTTTT GAGACAGAGT CTCACTCTGT CGCCCAGGCT GGAGTGCAAT 001840 001841 GGCTCAATCC CGGCTCACTG CAACCTCTGC CTCCGGGGTT CAAGTGATTC TCCTGCCTCA GCCTCCTGAG TAGCTGGGAT 001920 001921 TACAGGCACC TGCCACCACG CCCAGCTAAG TTTTTTGTGT TTTTAATAGA GACAGGGTTT CACCAGGTTA CCCAGGCTGG 002000 002001 TCTCGAACTC CTGACCTCAG ATGATCCACC CGCCTCGGCC TCCCAAAGTG TTTGGATTGC AGGTGTGAGC CACCATGCTC 002080 002081 GGCCTAGAGC AGTGGTTTTC AATGGAGCAA GGCAGGGGGC AATGTCACTC CCCAGGGAGG GTGACCAGCT GTCCCTGCTT 002160 002161 GCCCAGGACC GAGGGGCTTC CCTGCAAGTG GGGCTTTCAG TGCTAAGACC AAGACAGTCC TAGGAGAACC AGGGGACCCT 002240 002241 TGGCAACCTA TAGAGACATT TCTGGTTGTC ACAGCTGGGG CATGGGAGTG CTCCCGGCAT CCTGGGTAGG GCGGCCAGGG 002320 002321 ATGCTGCTCT ATATCCTGCA GTGCCCAGGA CGGCCCCACC ACAGACGGGG ATGCAGCCCC AAACGTCCAT GGTACCAGAG 002400 002401 CTAAGAAACC CAGAGCTAAG AAACCCAGAT CTAGAATGTT CTAGAATGAA CATTTCATTT GCAATATATA AAGCATCCAT 002480 002481 CACAAAGAAA CAACATCTTC AGCAGTGATC TTGGCAGGCT TCCCTCCTTA GGGGGGTCTC ACCACGCCCA CCCTCTATTG 002560 002561 CTGGGCAGGA GGAGGAAGCC GAGGCAGGCT GGGTGCCATT TCCCTGTGGG CCTCTCTGGG GACGCACCGA GCTCGTGGCA 002640 002641 GCTGCTCACC TGGAGTAGTT GGGGATGGTG CCGTGCGCGG CAGTATCCTT CATGGTGTAA GAGTTCACGC GGTGGGCATG 002720 002721 CCAGCAGCCG CAGCCCTGGA ACATGGTGTC GGTGACGTGC AGGACCTCGT TGCAATGCAC CTGCAGCTCC CCTTTGGCCC 002800 002801 TGCCCTCCAT GGCCAGGTTG ACCCGGATGT AGAATGAGTC CCCCGAGGTC GCCACTTTGG CCTCCAGGTC CTGGAGTAGC 002880 002881 CTCTTATAAC CTGATAAAAG GGGACATGAG CCACAGATGA GCCACAGATA CGAGCCTCTG CGAGGAAGGT TGCAGAAAAT 002960 002961 TAAAGTAGGA GAGAAGGAAG GACCCTCCCA GTCTCAGAAG CTGCTCTGGC ACTGTAGTCA GTGGGTGGGA GGTTTCCAGC 003040 003041 TGGCTTGGGG GCCTCCTGGG GACCTGGGGC ACAGCCTGGC TGATCCTCTC TTGGCTCTGG GGGTCCCTGG CTGCTGGGCG 003120 003121 TGCAGAAGAA CCACCAGGGA CTTAAGGGTC ATGGAGTCTG GCCAGGCAGC TGTGCACACG AGAGGAGTGG TATGTGTACC 003200 003201 GTCCGTGTTG ACCTTCACAG ACAGGCAGCA GAAGCCGTCC ACCCTCCTGA GAAGCCCCAC GGCCTCCTCC AGGGTCGTGT 003280 003281 CCTCCAGGAC TGCCTTGAAC AAGGGCTCTG AGGCTTCGTA ATCAACCTGA GGGCAAGTCG AGAAGGTCAG TCTCTTTCCC 003360 003361 CCGGGACTCT GAATCCAGCC AGAAGGCAGA AGGCGCTGAG GGCACTGAGG CGAGGCGCGG GCCAGCCCTG CCGTAGGACC 003440 003441 ACTGCCTGCA CGCCTTGGTC AAAACAAAGC CACACACCAG AGCCTCTGTG GGGCCTTCAC ACCTCTAGTG ATGCGTGCTA 003520 003521 CACATAGTGC TGGCCAGAGA GTCAACTGCC AACCCTTCCC CAGTCGAGAT CGGGGGTTCT TTGTGATAAG CACTTTCCTG 003600 003601 TCTTGAAAAA GAAAAGAAAA GAAAAGAAAG AACCTCGGTT CTAGAACATT CAAGAGCATT CTAGATAGAG GTTTCTTAGC 003680 003681 CTTGGGATCA TTCTGTGCTG CTGCGGGCTA TACCGGGCCC TGCAGGATGC TGAGTGGCAT CCCTGGCCTT CACCTACCCG 003760 003761 ATGCCCTGGC TCTCCACCCA CAGCCTTCCC CACTGTGAAG GCCCACCCCC CAGGGCTTCC ACCATCCACT TCATTTCTTC 003840 003841 TCAATATTGT TCTAAGCTTA GGAGAGTAGA TATTTTTACA ATAAAAATTA AGATGTGTTT TAACACCATT AGAATCTAAT 003920 003921 TGGCCCCCTT AGGATATTGG GACTATCTCC CTGAACATCG TCAAGGGGCT CTGTTGCTTG AACTACCTCA GAGCTGATAA 004000 004001 TTGGGAACCT TAAGAGCAGG GTTCCCCAAC CCCTGGGCCA CATACTGGTA CTGGTCCATG GTCCATCAGG ACCCGGGTCA 004080 004081 CACAGCAGGA GGGGCGTGGT GGGCGAGTGA GCATTACGGC CTCAGCTCCA CCTCCTGTCA GCTCAGCACA GCAGTAGATT 004160 004161 CTCAGAGGAG CATGAGCCCT ATCGTGAACT GTGCACGTGA GGGATCTAGG TTTCACGCTC CTTATGAGAA TCTAATTCCT 004240 004241 GATGATCTGT TACCGTCTCC CATCACCCCC AGATGGGACC GTCTAGTTGC AGGAAAACAA GCTCAGGGCT CCCACTGATT 004320 004321 CTGAATTATG GTTCAGTGTA TGATTCTTTC ATTACATATT ACAGTGTAAT AATAATAGAA ATAAAGTGTA CAATCAAAAA 004400 004401 AAAAAAAAAA AA |
Predicted Small Protein
Name | NONHSAT056350_smProtein_311:598 |
Length | 96 |
Molecular weight | 10608.0776 |
Aromaticity | 0.136842105263 |
Instability index | 91.8926315789 |
Isoelectric point | 8.84234619141 |
Runs | 13 |
Runs residual | 0.00779113137174 |
Runs probability | 0.0283586754175 |
Amino acid sequence | MAEARVFFLPKDLGEWHPSPQPSSRAQGPSPPSVLYSSPEIFFFLRQSFALIAQAGVQWH HLGSLPPLPPGFRRFSCLSLPSIWDYRCAPPHPAP |
Secondary structure | LLEEEEEEELLLLLLLLLLLLLLLLLLLLLLLLEEELLHHHHHHHHHHHHHHHHHLLHHH HLLLLLLLLLLLLEEELLLLLLHHHLLLLLLLLLL |
PRMN | - |
PiMo | - |