NONHSAT059642
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT059642 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5421 nt |
Genomic location |
chr18-:60185101..60190521 |
Exon number |
1 |
Exons |
60185101..60190521 |
Genome context |
|
Sequence |
000001 cgggtctcgg ccggcgaggg gggcggtggc cggccggcgg ggtcgctggc gTCGTCTTCC CGGGCTGGGG GCGGGGCGTG 000080
000081 CCCGCGACGG CTCCTCCCCC TGGGCTCCTC GCCGGTTCTG GGAGCCCGGG TGCGGGTGGG AGCAAGCGAG CGAGGGTGTC 000160 000161 CTCCTTCCGC CTCCCTCTCT CCGCCGTCCG CGCTGAGCCG GGGCGGCGGT GCCTGAGCTG TTCCCTCGCG AGCCGGTGAG 000240 000241 GACGGAGCGG CTGGGTGAGG AGGTGGAGCA GCCGGGCCGG GCGGAGAAGC TTGCGGGCTC CGCGCACCTC ACCTCCGCCA 000320 000321 ATCAGCACCG CGAATCGACG GTGACGTCGC TCTCCCCGCC CCCTGGGGGG CCGCCTTTCT CCAGGAAGCC ACGCCCAACT 000400 000401 GCTGGCCGGC CGCCTCCCTC TCGGCGGCTT CCGTGCGGTC CTAAAGGCTG GTGCTCGGCA GGAGGAGGAC GCGGGCTGGG 000480 000481 GCCGTGGGGC GGCGTGAGGG TAGCCCGGGA GCGGTGAGGA GCGTGCGAGG CCCACGTGAG CGGAGGGACG CGGCCGCTCT 000560 000561 CACCTTTCCT GAGGGCCCTG GCCCGGCTTT GGACTCCTGA TTCTCCTCTG CTTGCCAGCT GCCGCCCCGC CTCCGCCAGT 000640 000641 GGTGCCCGGG CTGCCTGCGC GGCCGGAGTG AACGCGTCCC GGGAGCAGGG GTTTCTCCGA AGTGAGTGCG CCAGCCCCGG 000720 000721 GACGAGCTCG TTCGAGTCCT CACCGCCCAG TGCACTTCCT GAAAGCCGGC GGTGGGCTGT CTCCCACCTT GTGAAACTTT 000800 000801 GCCAGGTGTC GCTCACAGGG GACTGGGTCC GGACGCGGGT GGCGGCGCTG GTTTGCGGCC CCGGTTTGCG GCCCCGGCGC 000880 000881 CGCGATCCCG GGCCGCGCCC ACGCCCAGGC TGGAGGCACC GTGCGCAGGT GGGGACGCGC GGCCGGGAGG TGCGCAGCGG 000960 000961 GACCCGGCCG GCCGAGGGTG AGCGCTGCTG GGGACGCTCC TAGTCTGTAA CGCTCTGTGA AAATTATTTC CTGGATAGTT 001040 001041 TAGGAAAAGC CTCTCCCTTC CCCGCCCCTA AACCTCTATC TTTTGGGAAT CATTGATTTG CTAAATGACA TTTCGGTGCC 001120 001121 TAACCCATTT TGAATCCTTG TTCTGCTGTG AATTTCATGT GACTGGAGGA ATTTAATAAG CTACCAACTT GACAGGCTTT 001200 001201 AAACTTAAAA AAAAAAAGTT TTGTTACGTT TTTCAGATTT AGGCTTCCAA GATGTTTACA CTCGCACTGT TACttttttt 001280 001281 tttttttttt tttttttttA GCAACATAGT CCAAATTTTT AAAACTCAGC TGGATCTTTT GAGGGTTAAT TAAAAGGTGG 001360 001361 GTTAAAAAAA ATCTTAAGAC TTTAAATTTA GAAGTCCTAC TACAGCTATG TAGTAGGAGT ATGCAGAAAG ATAAGAATCA 001440 001441 CATTGTAACT CTTTGCGGTG GTGCTGGAAC ATCTGTTGGG AGAGCATATG CTGAACTCTG TTCACCTCAC AAGTTTATGT 001520 001521 CCTAAGAGGC TCATTCACAG TTCAGTAAAA GGGTGAACTG AAGCCTGAAT CAGTTTCGGG GATGAAAGGG TGAGAGGGAG 001600 001601 AACTGTTTTC AGCACATTTG AGGTTGGCAA AATATATAAA AGTCACTCTT TCTTGTAATT TGCTAGTTCT TTACAGTCTT 001680 001681 TAGATGTAAT TTACAGCCAA GAAAACTTTA TTATGAGGAC TTATACGTCA TTGCCCTTTT TTGCTGTCAC CCTCAACTAC 001760 001761 CCTGGGATCT TCTACTCATA TCTCATCTCC TGTTCCCACT TTTCTAAAGC TTAGGGTGAA ATACTTAGGC AACTAGTAAT 001840 001841 AATATTAATC TTGCTAGATA TTCACAGGTT CATAGTGAGC CAGCTGTCTA GATCTGGATA TCTAGTGAGC AAATAAATTC 001920 001921 TTTACCTCCG AGTTGAtttt tgttttattg atcgattgac acagtcttgc tctgtcaccc aggctggagc acaggctcaa 002000 002001 gcagatcctc ctgcctcagc ctctcaagta gctgggacca caggcacgtg acaccacacc tggctaattg tttgtatttt 002080 002081 tttgtagaga cagagtctca ccatgttgcc caggctggCA AATTGAGTTT TATATGTGAC GCAGTCAAAG GGGCATTTTC 002160 002161 CTTGGCAATA AGAAGCCATT TGATATGAAC TCTCCACAAT AGTTGATGCA TACATTTTAT ACCAGAATTC AAATTTGTAA 002240 002241 TCAATAATGA TTACTTGGGT GTTTATAGCT TTGGCCAACA TTAAACAATA TAGTGATCAA AGCTTATACA CATAAGTGAC 002320 002321 ATATACCATG ATTTAATGAT TTTGGTTATC CATCAGCTGG ACAATTTGTT GTTTATCTCC GTCTCTGCAT ACTGCAGCTC 002400 002401 ACAAGGAGGC CTCAATGTTT TTTCCATGTT ACCATAAGTG AGAGAACACA TTCAGTAAGA GTGAAAAAAC GCTAGTGCTT 002480 002481 TTGAGGGAGG GGCCCCGATG GAAGTCCCAC TGTGACATGT GAGTTTTTAA GCTGGGAAAA CTACCCTGAT GATTCTAGTA 002560 002561 AGACTCCCTA GAAAGGGATT CCTCTTAGCC AGCCTACCTG TTGAGAACAC CTGCTCTAGA TTTTCTGATT TTTTTTTGTA 002640 002641 TTCCCTGCAT AATCAAATCA TGTGGGCCAG ATAACATTAT TGTGATAGTG GTGAGTGTGT GGTTTGTATC CAAATATTTT 002720 002721 ATAAAGAAAT ATATCTTGTA ACAAAAACCA GGACACAAAG TATTATTGTC TCTTGTCCCC AGATGATATA TATATTTTTA 002800 002801 ACTTCCCATA CTACACTGAT GTACCTAGAT GATGTTTAAT GCACATTCAG TATATTGTTT TATTTGCCTT TTTAATAGTG 002880 002881 AAAGGTGTCA TTATTCATAT ACCATGCCAT ACCGTAATAT AGCTGGTATT ATTGTCCAAG TATTTATATG TAACCAGAAA 002960 002961 ACTGATTCCA AGTGAAGGTT TGGATGAAGG CACTAGTGAC GGAGGAGGCT TTTCAACCCT CCTTTTTGCA GCTGGGTTGC 003040 003041 TGCAAGACAT TTCACCAAAA CCTCAGATAA CTGGGTGGTT CAGGGCAGCC TGATACACTA AAATATATCA ACTATAAAAA 003120 003121 GGATGCCCAG ATACGTCCAC TTCTACTTCA GATATCCTGA AACAGGCAGT CTGATTCATA TCAAGAATTT GTTCCCTATG 003200 003201 AGACCCCTCT CCCACTACac ctccctgttt cctccattag aatataaata tcttgaagtc actgaccatg ttttattcaa 003280 003281 tgttatgttt tctcatctgg cacacagtag atgttcatcc atatttgttg aataaatgaa tgaatgaatg aatgaaCAGT 003360 003361 GCTCCCGTAA CAAAAAGTAA AGGCCAGAAA CTCTTGGGTC ACCTGGAACC TTGTTCCTAC CTACCAGGGA AAAGAAAACA 003440 003441 TGTCTCAGCA TTATCAGACT AGCCCTGAGA TTCACTCCAG TTGAATTGGC TGAGGTTCTA TGGCCATTCT TGATCAGTCA 003520 003521 CTGGGGCCAA GGCAGTGAAT CAACTTCAGA ACCATATGGG TCCCTTCCAA GGAGACCCAG GGCTGTTGGA GAGGGGAAAG 003600 003601 AAAAATATGA ATGCAGGGAG GCACCAACAT ATGTCTGATA TCATTGTACT TTAATCTGTA GTTTGATCAT TTAAATTGCC 003680 003681 GTGGGTATAA GGTACCTCAA AAATAAATTT TTGTTTAGTT AGTTCACATA CAGCATGTAT TTTAAAACAG GTGTTAAATA 003760 003761 TTAAACTGTC TTTAAAGATT ACACTTACAA AGCTGATCTA AAACACCAGT AAGTTATCTG CTGATATACA ACTTAAGGAA 003840 003841 AAAATTAATT GCATATTAAA ATTAAAAATA CAAGTTTTTG TTAAGGTTTA CAAAAATACG GTGACAGACT TGAGATAGAA 003920 003921 ATTCTTGGTG GTGTTACTGT GACAAGTATT TCCATTGGTA ACCTGGGAAT CCATGCCCAG CACTGTGGTA TATGGCGTAT 004000 004001 TTTCTGGAAG ACTAGCCTTG GATTGAATTC ACAGTCTCCC TGGAGTTGTG GTTCCATTTG TCAGAAAGAT TCTTAGGGAT 004080 004081 TTAGACTGAC CAGGCTGTCA TGTTCTCACA CTCATACATT TGTAATTTTT GGAAAAACCA TAAAACCCAC CAGTCTTTGG 004160 004161 AGACTGTCCA GAAATAAACT TGATTCTAAA CTGGTTTGGT TTGGAAAATC CTTAGGCTAC TTGTGTTaaa aattaaagaa 004240 004241 ctagctgggc atggtggtgt gtacctgtag ttccagctac gcaggaggct gcggcaggag gattgcttga gcccaggagt 004320 004321 tcgaggctgc agtgttctgt gattgcgtct gtggagcgcc accgcacttc agtctggaca acataatgaa acctcatctc 004400 004401 TTAGAAATGA ACTGGCTGAT GTTAGGTACT TGCCAGGGTA GACGACCTTA ACTAAGCCCC TGGGGTTCTG TGAGACCTCT 004480 004481 GCAAATAGAT CTTCTGCTTA ACTGTTCAAA AAGGCAAGGG CTGTCCCCCT CAAAAAACAA CATTGACTTC TAGAGACCCA 004560 004561 TGGAGAGATG GAAGTTTCTG AAGACTGGCT TGCTAGATAG GAAAATAACC AATGCTCCAG CAGTGTTCTT GGGATTGGAA 004640 004641 TTTGCTGATT CATGTTTTTT AAAATGCATG ATCACATCAA ATTTGCTGAG CTGTTGACTA TCAACCCAGC CTAAACCCAC 004720 004721 CGGCTCTTAC CCTTTAACTT TCATAAAAGA GAAGCCTGAT TTTGTTCAGG TATCTAGCCT TCTCCCAAAG ACCCTGTGTG 004800 004801 GCTTGAAGGA TACCTTTGCT GGAGCCATGG ATAGGATAAA TCTCGATCAG TAAAACAATT AGGAAATCCT GTACTTTTGC 004880 004881 AATTGGTTCG gaatgattcg tacatgacaa aggacacacg aggcaatttg gaggggctct cattggccaa atctggcaaa 004960 004961 atttgagtat caaaaagata agatggtacc attgaataga aagagaatcg aactccatag ggatttcaaa gaaaaagagg 005040 005041 ttggggaggg tgcagagaaa aaaaacaaca gcatctttat agaagagtgc ccctaaaaaa atgcagaaag agagagtgag 005120 005121 aaaagtacca ctttgctacc accaaatgta ataattgatt aaggtatttt caccattgag tgggaagtta agaaatgaaa 005200 005201 catgtattct caaagtacca cctcatttaa aaaggagaag aggtactttt acacggataa atctgatgaa tacgacccca 005280 005281 accatgtagt cacaataatg ggacaattta atatgttctt ccccatgtcc tggatgccac tggaagtgca cactgcttgt 005360 005361 atgtaatatt cttgccaaaa tgtttatgct gaatctaatc atggggaagt aagacaaatc t |
Predicted Small Protein
Name | NONHSAT059642_smProtein_3122:3334 |
Length | 71 |
Molecular weight | 8451.7356 |
Aromaticity | 0.185714285714 |
Instability index | 42.9315714286 |
Isoelectric point | 7.96966552734 |
Runs | 12 |
Runs residual | 0.0265912305516 |
Runs probability | 0.0359182712124 |
Amino acid sequence | MPRYVHFYFRYPETGSLIHIKNLFPMRPLSHYTSLFPPLEYKYLEVTDHVLFNVMFSHLA HSRCSSIFVE |
Secondary structure | LLEEEEEEEELLLLLLLEELLLLLLLLLLLLLLLLLLLLLEEEEEELLEEEEHHHHHHHH LLLLLLEEEL |
PRMN | - |
PiMo | - |