NONHSAT070042
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT070042 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3773 nt |
Genomic location |
chr2+:34902470..34950118 |
Exon number |
3 |
Exons |
34902470..34902994,34938646..34938840,34947066..34950118 |
Genome context |
|
Sequence |
000001 gtgaaactcc ctgccctgtt ctgtttctct ctgaccactg gtgcatgcag cccctgtcac gtattccttg cttgctgaaa 000080
000081 tcaatcacaa ccctttcatg tgaaatcctt agtgttgtga gctcttaaaa gggacagaaa ttgtgcactt ggggtgctcg 000160 000161 gattttaagg cagcagcttg ccgatcctcc cagctgaata aagcccttcc ttctacaact tggtgtctga gaggttttgt 000240 000241 ctgcggctcg tccttctaca tttcttggtc ccctgaccgg gaatcgaggt aactgaggga tggccgaggt agccccttag 000320 000321 gcagcttagg cctgccctgt ggagcatccc tgcaggggac tctggccagc ctgagtgacg tgatccaaag agcactcctg 000400 000401 ggtagaaaat tgcctgggtg gaacgcctca ccagaacagc acgtagcagg cccctgtgga ggattaacac agtggctgaa 000480 000481 caccgggaag gaactggcac ttggagtccg gacatctgaa acttgaattg acaagccgac atcagtctcc agagtgaatc 000560 000561 caaggagtgg acccaagaca tttgtgttct gtgatgtggt ggcatgttac ctgtcatctc cgatgcataa ctcctaaagt 000640 000641 gcgtctgggg cagttgtaca gattgcagag gataatactc aagatgttct ccaaggccaa ctagtcatca gtttattcat 000720 000721 GTTTCTGGGA TTGGATTCAT GAACTCATCC TTTGAACTAT TTCAACAAGC TTTTTCATGT AACTAATCTG CGGAAGGTAG 000800 000801 AAAGGGGAAA ACTGTTGGGT GCTAAAATGA CAACTGGTTC AAGGTACAAT GGCGAATATT TTTATTTCTG CAACTTTTCT 000880 000881 TAGAGGTTGG AAACTGGACT GGGCAGGAAG ATTCCTTTTT GTAAGATTAG TCTCCAGTTT TCATCAAGCA GTTTAGTGGG 000960 000961 GTATTTTAGG CCCAGTTCCC TCTCCACAGT CCCCAAAGGT CTTCTGTTAA CTTTAAATCC GCAAAGAGAG AGATCTCTGC 001040 001041 CAAGCAGCAA CTGCAAGAGC ATGTGGGTCA ATGTTACCAG CAGACACTCA AAGCCCATTC CCTTTACTTC AACACCGCTT 001120 001121 TATAAATTAT CTTAGAGACG TTGTCAGGTT GGTATTAGAG GTGAGTGGTC ATGACTTCAC GATTTCTCAT CTTTCTGAAT 001200 001201 GCATAGTggc tgggagtggt ggctcatgcc tgtaatccca gcagtttggg aggccgaggt gggcagattg tttgaccaca 001280 001281 ggagttcgag accagccggg gtaacatggc aagaccccaa tctctaccaa aaaaaaaaaa aaaaaataca aaaattgtct 001360 001361 gggtgtggtg tgcatgcctg tagtcccaag tcccagctac tctacttggg aggctgaggc agaaggatca cctgagccca 001440 001441 ggaaggccaa ggctgcagtg agccctgatg gtgccactgc acttgacctt gggcaacaga atgagaatga gaccctgtca 001520 001521 aaaaaaaaaa aaaaaaaaaa aagaaaaaaa aaaagaaaga aaaagagaga aagagagaga aagaaagaaa gaaaAGAATG 001600 001601 CATAGTGAGA TTTTACAGTA AAACTCTTTC TTAGAGGCTA AAAACTCTGG GGATCTCACG ATGTGGGTAC ATTTCTAGAG 001680 001681 ATAATATTTT AGATCTCTAT AGATATTATT TTAATACATC TTTTTCTTTT TGGTTTGACT GTGTATCATA TGGCTTTTCT 001760 001761 TCTTGGAAGT TATCAAACTT CTCCCTAACT AAGGTCCTTG CATATGCTGA CCTGTTTGAC ATACTCCCAC TCTGGTCTAC 001840 001841 TCATTCTTCA GGTATCATTT TCATTCCTGT CACTACCCCT TAACCCAACC CAGACAAGGT TATTGTGCAC TGAATCATTT 001920 001921 CAAAATGCCA CTTTAAAAAT GAGTAAATAT TTATGTAATT ATGTGTTGAA TATACCTCCT CTTTACAAGC ATATAAGTCT 002000 002001 ATGATACAAG TCTATGCTTG TCTCTTCTAA TTCTGGTACA TCATGTGATA TGAGAACCAT GGTAGGCAAT CAATAATGCA 002080 002081 GAGACGAAAT GTTTTTATCT TAGAGAGACT CTCACAGAAG TTTCTAGTTT AGAGATGCTT CACTGAAGTT TATGGCCTCA 002160 002161 ACTTCCTTGG GTCTTGATTA CTATCAGTGG ATGCAGTGAT GGAGGGTAGG TAAAATCCAA TGTTATCTAC AAGTTCTAGA 002240 002241 CTACAgccaa caaacttttt ccaaaatagg ccagataata aatatattag gttttttggg ccatgaagtc tctgctgcaa 002320 002321 ctactcagct ccacatttgt agtggaaaag cagttataga tgaaacataa aatgaattag tgtggctgtg ttcaaaaaaa 002400 002401 gctattttca aaaacagcca gtgggaaagc tttggtcctt gagccatagt ttgcAAAATT TTGTTCTAAA CAGTAATTCC 002480 002481 TTCACTGGAG ATTTTAAAAA CAGAAAGAGA ATACAGACAG CTATACATGT TCTGGTCTAT TCCTGTTCTC TAGTATAGCA 002560 002561 GCACCTTAAA ATTGTATTAC TAACAGAGTA CAGGAGATTG TATGGAAGGC CTATAGTGAT GACTCTTTCA TCAGCTTTGT 002640 002641 TCGTAATAAA TTAACTGTAT GTGTTTCAGA GAGTCATATG ACTCCAAAAT GATTTAACAC ATGCTGCTAC AAGCCAGCCT 002720 002721 TCTTAAGTTT TTATTAAATC TTGATTGTTT TGGTCACATA ATTTTTATAT TAAATCCTGT GATACTCATT GTTTTTCTAT 002800 002801 AAAAATCATC ACATTTCAAG TGTTAGGTAG TGTGTATAGA ACTGACAGGT AATAATTTTG ACAGGTATGG GATTAAATAG 002880 002881 AATCCATCCA AAACCATTTA CTTTCCTTAT ACATTATAGC AGAAGTGGCT AAATTAGAGG GTTGTTCCTG TCTCCATCAT 002960 002961 GCACTTCTGT CTTCTACTCC ATCCCTTGTA TATATTGGGG ATATTTTGAG CCAAGTGCTA ACGTTACTTA CACAGCTGAT 003040 003041 ATTTCAGATT AATATGAATG CTGACCGTTT GCCCTCACAA CATGCCCACA ACACATGGAT TATACAGGGG AATTAATCGT 003120 003121 TAGCAATGAA TTCAACATTT AGCTTTTAAC ATTTTTATTC TGCCAGTAAG GCCAGAGAAT AAATCTATTC TTTCTAGCAG 003200 003201 GCAATTATTA ATCTCTGGCT TTCACAAACA GCAAACGGCC ACTGAATCCA GCTGACAGCA TATATTTATT TAAAGATTAA 003280 003281 TAAGGAGAAT TATTTATATT AGTTAAAACG TATTCTTCAT TATGTTTAAA TCTTTCCAGA GCTATGGCAG GAGTTGGATT 003360 003361 GGAGTATACA GAATGGATTA ACTTATTCTA ATTGTTATCT AAAGTAGAGG CATTGAGCAC tgatatggtt tggctgtgtc 003440 003441 ctcaaccaaa tctcatcttg aatcagttcc cataatcccc acgtgtcaag ggcgggacca ggtggaggta actgaatcat 003520 003521 gggaacggtt tccctcatgc tgttctcatg atagtgagtg agttctcaca acatatgatg gttttataag cgtctgtcat 003600 003601 ttccgctgct gttactcatt gtctctcctg atggcctctg gagagatgcc tttgccatga ttgtgagttt cctgaggctt 003680 003681 cctagccatg tggaactgtg agtcaattaa acgtcttttc tgtataaatt acccagtctt ggatatttct tcatagcagt 003760 003761 gtgagaacgg act |
Predicted Small Protein
Name | NONHSAT070042_smProtein_1373:1633 |
Length | 87 |
Molecular weight | 9917.3584 |
Aromaticity | 0.046511627907 |
Instability index | 60.5756976744 |
Isoelectric point | 10.2050170898 |
Runs | 9 |
Runs residual | 0.0349704963554 |
Runs probability | 0.0453787120454 |
Amino acid sequence | MPVVPSPSYSTWEAEAEGSPEPRKAKAAVSPDGATALDLGQQNENETLSKKKKKKKRKKK RKKKRERERKKERKECIVRFYSKTLS |
Secondary structure | LLLLLLLLLLLHHHHLLLLLLHHHHEEEELLLLLLLLLLLLLLLLLLHHHHHHHHHHHHH HHHHHHHHHHHHHHHHEEEEEEELLL |
PRMN | - |
PiMo | - |