NONHSAT078229
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT078229 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2152 nt |
Genomic location |
chr20-:3276140..3296737 |
Exon number |
5 |
Exons |
3276140..3277596,3278676..3278822,3285087..3285190,3295680..3295767,3296382..3296737 |
Genome context |
|
Sequence |
000001 TCCCTAAAAA CAGTTGTTTT TTTCTGAAGT GAAATACAGG TGGAGACTAA CACATCCCCT CTGCTTGTCA TAAGCTCATT 000080
000081 AGCTGGACCT CAGGTCCTAG TGAGAGAGCC CACCAAGGCC TTGGGCTCTG AGCCCAGGTG ACCAGCAGAC ATCTCAGGTG 000160 000161 TGTCAGGGCC TGAGAGCACT GGACATGGAC ATGGTGGAAG GACTGTCCAG CCAGTGTCCT GGAAATATTT GAACACAGTG 000240 000241 GGGAGACCTA GCAGGGTTTT CCCTTGAAGT AGTTGACTGA AAATCTGCAT TCCTTTTGGA CACAGGTGGA AGATAATGAA 000320 000321 GTAAAATTGT CTGAGAAAAC CCAGCAAGCA GTGAGGGGGG ATGAGTCTTT CCTGGGCACT TATCTAACAG GAGGAGAAGG 000400 000401 AGCATATCTT TATTCCAGCA ATCTACAGTC CTGGCCTGAG GAAGGGAATG TTCATTTCTT CTCTAGTGGC CTTCTGTTTT 000480 000481 CTCACTGTCG TCATAGAAGT ATCATCATTT CCAAGGATCA CATGAATTCC ATTTCCTTCT ATGATGGGGA TTCCACCAGT 000560 000561 ACTGTTGCTG CTCTTCTCAT AGACTTCAAA AGCTCATTGC TTCCTCACCT CCCAGTTCAT TTCCATGGAT CAAGCAATTT 000640 000641 TCTGATGATT GCCCTTTTCC CCAAATCGAA GATATACCAA GCATTTTACT CAGAGGTCTT CTCCCTCTGG AAACAGCAGG 000720 000721 ATAACTCAGG GATCTCTTTA AAAGTGATCC AGGAAGATGG ATTATCTGTG GAACAAAAGA GATTGTAAGT GGCTGCTTCA 000800 000801 GTATTTGTGC TTGCTTCCCT AGGCTTTGTG GGTGTGCTCT CTCTGCAGGA TGCCTCGCAT TATGTAACAC AGGGGTCTTG 000880 000881 GCTTCTGAAA GGGTCAACAC AGACATTTCA ATGCTGCCAA CTTGCAGGTA GCCGGTGCCC TTGGGGGAAT AGAAGGCAAG 000960 000961 AGAGggccat gtgcagtgcc tcacacttgt aatcccaaca ctttgggagg ctgaggcagg aggatgaatt gagcacaaga 001040 001041 attagagact agcctgcctg ggcaacatag tgagaccccg tccctacaaa aaataaaaaa ttagctgggt atggtggcac 001120 001121 atgcctgtag tctcagctag tcaggaggcc ggggtggaag ggttacttga gcccaggaat tcaaggttgc agtgagccgt 001200 001201 gaccatgcca ttgcacttca gcctgagtga tgaaacaaga ccctttctca aaaaaaaaaa cgaaaaaTGT CCCCACTGCC 001280 001281 AGGAGCCAGT GTGGCTGTGA GGGGCCACGT CTCACAGCCC TGACCCGGGC CAAGCATGGT GTTGGGCGCC GGGCCCGTCT 001360 001361 CACCTGTCTT GGGGGGCGCC cagtgtctta ctctgtcacc ccgggtagag tgcagtggtg cggtcctggc tcactgcagc 001440 001441 cttgacctcc taggctcagg ttatcctccc gcttagcagg tgggactaca gAGGTTGCAG AACTTGAAGC TAATTTACCT 001520 001521 TGTACATGTA AAGTGCATTT TCCTGATCCA AACAAGCTTC ACTGTTCTCA GCTAACAGTA ACTCCAGATG AGGGTTACTA 001600 001601 CCAGGGTGGA AAATTTCAGC TTGAAACCGA AAGTTCCCGA TGTGTACAAC ATGGTGCCTC CCAAAGTGAA ATGCCTGACC 001680 001681 AAGATCTGGC ACCCCAACAT CACAGAGACA GGGGAAATAT GTCTGAGTTT ACTGAGAGAA CATTCAATTG ACGGCACTGG 001760 001761 CTGGGCTCCC ATGAGAACAT TAAAGGATGT CGTTTGGGGA TTAAACTCTT TGTTTACTGA TTTTTGAATT TTGATGATCC 001840 001841 ACTGAATATT GAAGCTGCAG AACATCATTT GCAGGACAAG GAGGACTTCC AGAATAAAGT GGACAACTAC ATCACGCGTT 001920 001921 ATGCCAGATA ATAAAAGGGG ACGGTTGCAG GCCCATGGAC TGTGTTACAG TTTGTCTCTA ATGTGAAACA GCAGGAGGTA 002000 002001 GCCCCACCTC CCATCCTCAC GCTCCCTCTC AGTCCCCTGG ATTGCCCCAG TCCTGTGACC ATGTTGCCCT GAAGAAGACC 002080 002081 ATCTTCGTGA CTGCTCATTG TAGATGGGGA ATTCAACATA AATACAGCAA GAAAATGTGT TTGGGCTTCT TT |
Predicted Small Protein
Name | NONHSAT078229_smProtein_521:787 |
Length | 89 |
Molecular weight | 9913.2102 |
Aromaticity | 0.125 |
Instability index | 47.0320454545 |
Isoelectric point | 6.23822021484 |
Runs | 15 |
Runs residual | 0.0390909090909 |
Runs probability | 0.0381381381381 |
Amino acid sequence | MNSISFYDGDSTSTVAALLIDFKSSLLPHLPVHFHGSSNFLMIALFPKSKIYQAFYSEVF SLWKQQDNSGISLKVIQEDGLSVEQKRL |
Secondary structure | LLLEEEELLLLHHHHHHHHHHHHHHLLLLLLEEEELLHHHHHHHHLLLLHHHHHHHHHHH HHHHHHLLLLLEEEEEEELLLEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiii iiiiiiiiiiiiiiiiiiiiiiiiiiii |