NONHSAT083025
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT083025 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1472 nt |
Genomic location |
chr21-:47559330..47560952 |
Exon number |
2 |
Exons |
47559330..47560434,47560586..47560952 |
Genome context |
|
Sequence |
000001 CAGGAAGGAA ACAAGACGTG TGGTTTAGAG AACCATGAGC GGGGACAGTG AGACTGTGCT AGGCATCAGT GGTCGAAATC 000080
000081 AGTGGATTGG TTTACGCTCC CTGTGAGCCA CGTGAAGGTG GACGGGGAGT GCTGGATTGG TTTACGCTCC CTGTGAGCAA 000160 000161 TGTGAAGGCA GACGGGGAGT GCTGGATTGG TTTACGCTCC CTGTGAGCAA TGTGAAGGCT GACGGGGAGT GCTGGATTGG 000240 000241 TTTACGCTCC CTGTGAGCCA CGTGAAGGTG GACGGGGAGT GCTGGGTTGG TTTACGCTCC CTGTGAGCAA TGTGAAGGCA 000320 000321 GACGGGGAGT GCTGGATTGG TTTACACTCC CTGTGAGCCA CGTGAAGGTG GACGGGGAGG GCTGGGTTGA TTTACATTCC 000400 000401 CTGCGAACAA TGTGAAGGTG GACGAGGAGT GCTGGGTTGG TTTACACTCC CTGTGAGCCA CGCGAAGGTG GACGGGGAGT 000480 000481 GCTGGATTGG TTTACACTCC CTGTGAGCCA CGTGAAGGTG GACGGGGGAG TGCTGGGTTG GTTTACACTC CCTCTGAGCA 000560 000561 ATGCGAAGGT GGACGGGGAG GGCTGGGTTG ATTTACATTC CCTGTGAACA ATGTGAAGGT GGACGGGGAG TGCTGCATTG 000640 000641 GTTTACGCAC CCTGTGAGGC ACGTGAAGGT GGACGGGGAG TGCTGGGTTG GTGTACACTC CCTGTGAGCA ATGTGAAGGT 000720 000721 GGACGGGGAG TGCTGGATTG GTTTATGCTC CCTCTGAGCA ATGCAAAGGT CGACTTTTGA AAAACATAAG GAGATATCTG 000800 000801 TACCTTGCAC CAAATACATA AGTAATTTCC AGATGGAATA GAAAACTGTA TTTCCCCACC ACCAACACAA CCAAGCCTCA 000880 000881 CGATAAATCA CAGAAAACAA AACGGACCGG GCGGGCAGGC CTCGGCCGGA CGCAGATGAG GCCACCTAAA GCACACCCTT 000960 000961 GGCCAAGATC TGCCCAGGGA GACCATGGAC ACCGCAAGGC CTGGGTGTGA GAGAGTGTTC GTAGCGCGAG TCGCAGCTTG 001040 001041 AGGATGGCTG TCCTGCCTCC GCCTGCAACT GCTACAGACC CTTGTGCAGA GGACAGCCTG GGAGAGGGGC TGCAGCCAGG 001120 001121 AGGCCTGGTC TGGATGATGC CCCAGCCAGT CAGGGAGACA CTGGGCATTT CTGTTCCTCG ATCACTGCTG TCGGAATGGT 001200 001201 CAAAGGATCC AGATCTGGCT GGCGCCCAGG GAGCATTTGC TCTCATCCAT GGTCGAGGGT AGGGGCTGTT GATGATGACT 001280 001281 TTCTGGTGGA GAGTTGGCTG AATCTTCCAA GATGAAGTGA GCATATTCCC CACTGAGAAC CCCTTGGCCA GGGCTCTGGC 001360 001361 CACAGTCCGT GTGAGTAGGG CTCCCAGTGG GTCCTTGGAA GGTTGGTGTG TGGTCCCAGC TGTGCTCTTC CACACGGGGT 001440 001441 GGGTCCGAGG AGCCGAGTGC CTTACGGTGA CG |
Predicted Small Protein
Name | NONHSAT083025_smProtein_1043:1261 |
Length | 73 |
Molecular weight | 7465.4792 |
Aromaticity | 0.0416666666667 |
Instability index | 54.2916666667 |
Isoelectric point | 4.49957275391 |
Runs | 8 |
Runs residual | 0.0298053527981 |
Runs probability | 0.0232843137255 |
Amino acid sequence | MAVLPPPATATDPCAEDSLGEGLQPGGLVWMMPQPVRETLGISVPRSLLSEWSKDPDLAG AQGAFALIHGRG |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLLLEELLLLLLLLLLLLLLHHH HHHHHEEEELLL |
PRMN | - |
PiMo | - |