NONHSAT090412
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT090412 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2052 nt |
Genomic location |
chr3-:71666786..71711939 |
Exon number |
5 |
Exons |
71666786..71666987,71677814..71678203,71680963..71681402,71703623..71704067,71711365..71711939 |
Genome context |
|
Sequence |
000001 AGTCTCCAGG CTTTGAAGTA TTCACAGGAA ACTCAGCAAA GAGAAATCCA GTTACTTTGA GTTACTTTGG GTCGGTGGAT 000080
000081 ATATTGTTTG TTTGGTTTGG TTTTACAGCA GCTGGTGGTG AAGCCCAAGC CCCATGTGCT GGCACCACCG GAAATTAAAA 000160 000161 TGCCTTCTTT CTTCTTCTAC CTGAGACAAG AGATTTTTAA CATTGCATTT TGTAATTCAA GGGAACGAAA CATAGAAGCA 000240 000241 CACATGTTGA GTTTTCCCCA TGTTCTAATG AAAATTCAGA GCTTTGCATG CTTTTCGCAT ATAAGTGTAT CTTTCTGAAT 000320 000321 TTATAGCACT TTCAATATAT GAGGCATTTA AGAGTTTACA AAATGTGTTT GTGTGCATTA GCTCATGTAA TCTTTCTAAC 000400 000401 AAATCAAGGC AGTGAGCTGG TTACCTCTGG TTTGCAGATG AGTTGGCCGA GAGAAAGGTG CAGAGACTTG CCCAGCATCA 000480 000481 CTTAGCTGGT CGGTGAGTGG CAGACCACAG CCCTGTGTGA TTCCAGAGGG AATACTTCCA GCTAAGAGAC GCTTCTTTCA 000560 000561 ATTTATTGGT GGAAACTTTT TATAATTCCT GCCTGTGAGA GAAACAGAAG AACACAGCTT GTTTGGGGGA TCCCAGATGG 000640 000641 AGTTTGCAGG ATGGATATTA GAAAAAAATC ATCTCTTTTG AGTGGTAGAC TGAGAAATTT AAATTGGAAC AGCGATGAAA 000720 000721 AACCATACAC GTCGGGAGAT GGAGTGGGGG TGAGGCAACC CATGAAGTCA GTTTTGCATC TGTAAAAAGT CATTTTGGAG 000800 000801 AGTCGATCTG CACTTTAAGA ATTCCTAATG GGTACAGTCA GTTCAGACCC AGCTGAATGT GTTGGAGTCT CTGATAGTGT 000880 000881 TCTTCTAATT AAAGGGGGGT GGGGAGGGAA ACAATAACAG ACACACAAAA ACACACACTC AACCAAAGAT GGGGGAAATG 000960 000961 TGAGCACCAG ACATGCTCGT GCTGATTTGG GGATGACAGT TGAAGAGACA AGAACATTTT ATTTCTAACT TCGTCATTTT 001040 001041 GTCCCACTTA AGCAGACCCT GGTAGAAGGA TGCCTGCATT TGGGAAGTGA CACCAGGAAA CAGTGGTAGA GTAGTGGAAA 001120 001121 AGTGAGTAAG GCTAGGGAAG TCAATGAATT ATCAAGCTTG CTACCTTGTG GATAACTGGG AAGACCACTT AGGAACCCTG 001200 001201 GGCAGCAGAA TAGAATGTGT GCTTCAGAAT GACTCCCCCC GACCCTCGTG ATGCCCCTGT CCCCTGGGGG CTGGGGGAGC 001280 001281 TGCAGTACAT ATCTACCAAA TCTTTCTTTC TTTCTTTTTT TTTTCTTTTT GAGATGGAGT CTCACTCTGT TGCCCAGGCT 001360 001361 GGAGTGCAAT GGCACAATCA CGGCTCACTG CAGCATCAAC CTCCCAGGCT CAAGTGATCC TCCCACCTAA GCCTCCTGAG 001440 001441 TAGCTGGGAC TACAGGCATG GTGGGCTCTT CAAAGTAGAG GATGCTCTAT ACACAAAGGA GTTTGTTCTT TGAATTATCT 001520 001521 TTTATTTATT GACAGCTGGG GTGATGCAGG GCTGTTTCCT GTGTTAAGAG AGTGTCAGTT ACTTAGCTAA TCATATTTAT 001600 001601 CACCCAGGAT TCTTTATTTG TTGATAGCAC TGGAGTATAT TGGAGTTTTT GTGTGCTACG TGTATATTTC CCTAGCTGCA 001680 001681 GTGAATGTGG TTTTTATATT TATGTGAAAC TGCTAATGTG TTGCTCGCTA GATCATGAGC AATGGGCTTC TGACAGCTCT 001760 001761 GTTCATTAGT CAGCTTGGGG GAAAAAATAA AAGAAAACAC ATTGATATAG AAACAGAGTG TGAGCCAGCA ATTATCATCA 001840 001841 GAGAGCACAA AATTACTTGA AGTCAGAAGT TTGAGACCAG CCTGGGCAAC ATGGTGAAAC CCCATCTCTA TTAAAAATAC 001920 001921 AAAAATTAGC TGGGTATGGT GGCAGGAGCC TGTAATCCCA GCTACTCGGG AGGCTGAGGC AGGAGACTTG ATTGAACCAG 002000 002001 GGAGGCGGAG GTTGCAGTGA GCTGAGATCG CACCACTGCA CTCCAGCCTG GG |
Predicted Small Protein
Name | NONHSAT090412_smProtein_1250:1429 |
Length | 60 |
Molecular weight | 6509.4656 |
Aromaticity | 0.152542372881 |
Instability index | 62.7152542373 |
Isoelectric point | 6.49481201172 |
Runs | 7 |
Runs residual | 0.0258124708443 |
Runs probability | 0.0268756151109 |
Amino acid sequence | MPLSPGGWGSCSTYLPNLSFFLFFFFLRWSLTLLPRLECNGTITAHCSINLPGSSDPPT |
Secondary structure | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHLLLLEELLLEEEEEEEELLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiii |