NONHSAT103857
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT103857 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6089 nt |
Genomic location |
chr5+:133772208..133778296 |
Exon number |
1 |
Exons |
133772208..133778296 |
Genome context |
|
Sequence |
000001 AAAACCCTGC AGCCACCTAA AGCATGCCCT GAGTCTCTCA GCCAGGTTTC ATCTGGGAAA TCTGAGTGAC AGTGACGTGC 000080
000081 AGGCAGCTGG AAGACGCACA GTAAACCGAG GAGCCTGTGA TGAGCTCAGA GGAGGTGAGT TGATGATCTG CTATTTATAG 000160 000161 CCCCACTAAG AGGCTCTGGC CGCCAGCTCC ATGTGAGTCT GGGTGGAAAT GATGCCTTCG CAGAGCTGAG AGCACAAAAT 000240 000241 GAAGTTGGTG ATTCATGGGC AGCAGCCACT TGAAAATATG AACACTCCTG CGTCCCCAGC CCCGCCGGCC TTTCACACCC 000320 000321 ATTTGGAGGC GTGTTGAGCA GAGCTGCTAG CCTGCTGCAT CCTAGTCTGC ATGTGTTTGG GCAGGATGTG AGGACAGGCC 000400 000401 GGTTCTACCC TGACAAGGAG CCTGCAAAGG GCAGCAGCAC GCCTGGGAGC ACTCCAAGAA CGTCTGCCCA CCCCCCGAGA 000480 000481 GGCCTCGGCT GGAACCCAGG GCAGGGCTGA GTAAGAGGTA AGCCCCGAGA GGACCTGCGG TCACAGAGAA AGGACACTTC 000560 000561 CTGCTCCTGC CCTCTGTCTC CAGGGGCGAC GCTGGCAACA GAGCAGCTTT CTGATGACGC TTGTTCTGCT GAACATACAA 000640 000641 AAATTTACAA TGAGGAAACC CTTGCAGCTT GACATTTCCC CCCGCACAAT TCCACAGCCC AGCACCTGTC ACCTGAAATA 000720 000721 GCTATTGTTT ATTTTCCTCA GTAACATCTT GGCTTCCAGG CCAAAGTCTA CTTGGAGGCC CAAACTCAAC TCACCCTATG 000800 000801 TGAGGAATGC CCTGGAGGTC TCTCAGTTTC CCACAACCAA ACTGGATTTA AAGGGCCAAA CCAGGATAAG GAGGCCAGCT 000880 000881 gagctctgaa gccagattgt ctgggttcag attctttctc tacacttgca gccacgtggc ttcagtcaaa ttgccctctg 000960 000961 agactcagtt tttctcattg gtaaaatgag gataattaca gaacctacct cactgggttg cggtgaaggg tgacatttga 001040 001041 gtagtggtca gcccagcatc cagcacatgg ACAGACTTGA TACTGGACAC TGCTGCTGCT GCTTTTGCTG TTGAAGTTGT 001120 001121 TTTCACTCCT GGGTTTTGGT CCCTGTACTG ATAGCACTCC TTTGCACACA GTCTATGGCA CTGAGGTTCC TTGTGGAGGT 001200 001201 GGTGCCCTGA GGCTTCAATA GAGACCCTCT GCCCATCACA AACAAACCCC ATATCAGGCT GCCAAGCATA GTGGACTTCA 001280 001281 CCCCGGGGGC ATCTCAGCCC CATGCTTGAC CGGCCCCTGC CTTTGCCTAG GAACCAAGTG CCTTTCCCTT GGGGCTGGGC 001360 001361 TTTGCCCGGG TTGACTACCC TGATGCTTCT GCTCCTCTAT GTCCTGGGGT GGTCTTGGGG GTATTAACTG TCACCATCCA 001440 001441 GTGGAGGGTT TCACCGAGGG TCCCAGGTGC TAACATGAGG TCTGTGGCCA GCAGGCAGCC TGGATGACTG GCCGGATAGG 001520 001521 CAGCAGGGAG GGCCTGGATG ACTGGCCGGA TAGGCCCACC TCACCTATGG GCTGCACTTG CAGCACAAAC TGCTGATTCA 001600 001601 TGGAGACTCA TGAGGCCTTG GCTATCTGTA CATTCTCCAT CTCCAGCTGT CGGCCAAAAT ATAATTGTAG TTGTCACTTT 001680 001681 GGCAGAGAGA TACTATGATG TGTCCTATCT CCAAGGCAGT GAGCTTTTGG AAGATAGGAG GGATCTGCAG CTGCTCCTGT 001760 001761 GGAGAGAACC ATTCTGGAAA GTGGTCTGTG TGAAGTGCAC CCAGGTGCAG TCCCAGGAGT GGTGTGAGCA GCAGGGTGAG 001840 001841 GCCCTATATT AGAATGGGCA CTGGTGTTGC CTGTGTCTGC ATCTACAGTA ATGCAATTCT GATGACATCA ATGAATAACA 001920 001921 GAGAGGCTGC CATTGAAATG AGGCATTGTT GGCAGCTATG CGGACTTGGA AAACAGCCAC CAGGCTTATG CACAAGTCAG 002000 002001 AATCCATCGT GTGTGGGGTA AATGAGTGGT TAGACCATGG GGTACATGGT GTAAGGGAGA TGATGCCAGA GACATAGCTA 002080 002081 GGACCAGACT GAGAAGCAAG GGACTCGAAG ACCAGGCCAT GCAGCTTGGA CTTGATCCTG GACATAGGGA AAGTGATGTG 002160 002161 ATTAGAGGAT GTGGGGGTTC TGGGCTCAAG CATCCTCGAA GGGTCGCACT AAGGGCAAGG CTCCCCCTCC CCACGGCAGT 002240 002241 TGGCAAGCAG CGGCTTGCTG TTTGAGAAGG TGTTTACTCC TCTGGAGCAT GAGTCCCACA CTCAGAAGGT GCTGAGACTC 002320 002321 TGCTCGTAGG GTAAGCATAT GAAGGGCCGG TCCCAGCCAG GACAGCTGGG AGTGCGCAGT CAGCAAGGCA AAGCACCAGG 002400 002401 CTTATGTCTT CCCTCTTCTT CCATCCTTCT TGGCCAGGAG TTTATTATTG AAGCACCTGT GTGCAGATGT GCTAAATGTA 002480 002481 GATGACTGCA CCACTCAGGT CAAAGGTCAG GGAGGCTCCT GGGACTGAGA GATGACCCCG CTGCCTGTGG ATGTGGCCTC 002560 002561 CCTCCCCACT AAGGAAACAG CAGAGGCAAA CATCCAAGCT TGCCTGATGG AGGAATTCCT AGAAGAAAGG TTCTATCCTT 002640 002641 ATGTACTTAA ATACTGATTT AGAGGTTGGT TAATGGAGAC AGAAGAATAC TAAGTGTTGG GAGCCGTTAC CAGTGGAGGA 002720 002721 CCCACCCATG AGCACGGAAG CCAGAGCATA TCTGGACCAT CATGTAAGTC CGGAGGAAGA CACGATTCAG TTGACAAAAA 002800 002801 TTTGTGTACC CTCCTCAGAA GTGCATTGTT GTGCAAGAAA TGGTTTGGCA GTGACTCTCC CCTTTCAGCT GCAAGCCATC 002880 002881 AAGGGCTGAA TGCCTCTCCA GTTGCCAGAG GAGGAGTGGC TTGTAGAGCG GATGTTCCCA GTCTGGCAGA ATCTTCTGTC 002960 002961 AAGTGTTCCC TGAGTTGGGC TGCCAGGGGG CAGGTGTTGA ACAGTGAGGA AGTCCTCTCA CCTGAGCAGC TTCTGATGCA 003040 003041 AGAGGGGTGT CGTGAGTGCC TGGAATCCTA TGCCTGTGGG TGGAGCGTGA ACTTAGCCTC TTCCCTGAGG GTAGGCAGCA 003120 003121 TGTCATAACC ACTTCTGGCT GCCCATGGCT GGTTTGGGGC AATATGCCAA GATGTAGTTT TGCCTATTTG GTTTGCTTTT 003200 003201 TCCTTTAAAA TGTACAAAAG TTAATAACAT GTAATGGGtt tttaaaaaat tataaaatat GAGATACAAT CAGAAAAGTC 003280 003281 CAAACAgacc gggtgaggtg gctcacacct gtaatcccag cactttggga ggccgaggga gtggatcacc tgaggtcagg 003360 003361 agttttagac cagcctggca aacatggtga agccccatct ctactaaaaa tacaaaaatt agctgggcgt ggtggtgtgc 003440 003441 tttgcctgta gtcccagcta ctcaggaggc tgaggcagga gaattgcttg aacctgggag gctaaggttg cagtgagcca 003520 003521 agactgtgcc actgcactgc actccagcct gggtgataga gcaagactct atctcaaaaa aaaaaaaaaa gaaaaaaaag 003600 003601 aaagaaaaga aaaGTCCAAA CAACTATACA TACAGCTTAA CAAATAATTA TAACATGAAt gcactccaga ctgggtgaca 003680 003681 aagtgagacc ctgtctcaaa aaaaaaaaaa aaaaaaaagg aaaaGGAAAA AAAGATttaa ttcatgagtg agccaataaa 003760 003761 atattacaac caattcaaag gagaactcaa agtatcacaa ataatagtca gatgaagaaa gttgatttta gaaatggatg 003840 003841 caaaactggt caatatccat gaggcagtag tcagttgcaa ttcagacaca atttgcattt ctgtgaacag gaattatttg 003920 003921 cattggtatg acgtttctac aatttaattt ctatcttgag agggttgaga aatagtctag tcaaagacaa caaaagccag 004000 004001 agataacctg gaTGAATAAG TTATTCAGGA CACCCCCCAA GTTTCAACAT CATTCACAGT TTCTTCTTAC ACTTGTAATT 004080 004081 GGTTCCCTAC CTACCTCCCT CCTAGAAATT CCCCTCTGCA CGTTCCTACT GCCCTGTTTG AACCAGCTGA CCCCACCCTT 004160 004161 CCTCCCATGT TATGGTGATG GGCCAGGGCT GAAAGCCTAA CCTGGGGGAA CGTACTTATC ACCTAAGCTG AGCCAAACAA 004240 004241 GTGCTCCCAA GGCTTGGACA CTGCTTCTAC AGGGGTGGGC ACTGACATTG TCAGACTCGG GCAGGCAGAC TCAGGCAGGC 004320 004321 ACACCCAGGG CTGGTAGTCA TAATGGGCCT TGTAAAAGAT AACCAAGCAT TTTCTGTAAA GGGTAACAGA TTAGGAATAC 004400 004401 AAAGAGAAAA AACTGTAGTC CAGTGAGAAA GACAGAGTAC CTGTCCAATG AGCTTGCAGT GCCTGGGATG ACTTCCTGCA 004480 004481 TTTGGGTTCC ATTAGAGTCC CCCTTTATGC CTGAATCAGT TTGGGTGGGT GTCTGTTCCA CTAATTGCCT ATCTGAAAGA 004560 004561 ATAGCTGACG TACAAGATGT ATGATGACCT GCAGGGCTGA GGTCTTTTTC Tttttctttc tttctttttt cttttttttt 004640 004641 tgagagagtc tcactctgtt gctcaggctg gagtgcagtg gcaccatctt gctcactgca gcctctgcct cctgagttca 004720 004721 agcaattctc ccacctcagc ctcccaagta gctgggatta caggggcccg ccactactcc cggctaattt ttttttttgt 004800 004801 atttttagta aagatggggt ttcaccatgt tggccaggct ggtctccaac tcctgacctc aggtgatcca cccaccttgg 004880 004881 cctcccaaag tgctgggatt acaggtatga gccaccaggc ctggccAAAA GTCTGGTGTT TCTTgagagt caggggaggg 004960 004961 gttagttgaa gggggcaatg tggccaatta cttggggtcc tgggggcctc agagggaagt cggtgcttca cttgaagagt 005040 005041 atggggttta agaaagtgag tgctgtggtc agatctgtac tttggaacaa tcactctggc tgctggtgga gaacaggtgg 005120 005121 gagggataat ggacaggagg cataaagacc cctcaggagg cagccacagg catccaagcc agaagcgatc acctgaacag 005200 005201 aggaaagggg tggaaggaac cgactcaaga aatgttgggc cagaatttca cctgaaaaac aagacaaaga gaacccttag 005280 005281 gttttcagtc aggaccacca tgtggttaga gtgtcaccat cataggagaa agaaaccata actagcgggt gggctgggag 005360 005361 atgacgagct cagtttaaga cttggtgagt gtgaaagagc tataggcatc taggaggaag catctggcag gcaggtggat 005440 005441 acacaggtct gaaatggagg gagggtttgg cctgcaaggc tggagaGAGG AGGCTGGAGT GAATGTGCCA TGAACAAGTT 005520 005521 TACATGAATG TGACTGGGGA GCAGGGAAGA GGGGGAAAGT GCAGGAACGT AATGCCTCTT GACCCTAAAA TTCTCACTTG 005600 005601 CTGAGAGTAA GGGTGAGGGG AGGGGCTGGG GGCAGGAAGG GGGAGTTTAG AACATTTATT ATGGGAAACA GGAGAGAAGC 005680 005681 TGACCCAGGC ACAGCTATGA CATCTAAGAG GAgtcaggag actagttctt gccaaaggaa tgttgattga ggatgacatg 005760 005761 tcacttccag cccaagagag ttaagaagaa gacgtgactt ctccactctt cctttcccct tctcccagtt cgatgcccct 005840 005841 ttgttacaga ctgaatgttt gtgtcccccc aaaaattcct atgttgaaac ggaatcccca gtgtgatgat ttggaggtgg 005920 005921 agcctttggg aggtgattag gtcttaaggg tggcgccctt aggatgggat tagtgcctgt ataataagag gccagcggcc 006000 006001 aggcatggtg gctcaagcct gtaatcccag cactttgaga ggctgaggtg gctgggtcac ttgaggtcag gagtttaaga 006080 006081 tcagcctgg |
Predicted Small Protein
Name | NONHSAT103857_smProtein_1853:2020 |
Length | 56 |
Molecular weight | 5846.8309 |
Aromaticity | 0.0363636363636 |
Instability index | 55.9309090909 |
Isoelectric point | 7.58734130859 |
Runs | 7 |
Runs residual | 0.0242424242424 |
Runs probability | 0.01716001716 |
Amino acid sequence | MGTGVACVCIYSNAILMTSMNNREAAIEMRHCWQLCGLGKQPPGLCTSQNPSCVG |
Secondary structure | LLLEEEEEEEELLLEEEELLLHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |