NONHSAT110240
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT110240 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1588 nt |
Genomic location |
chr6+:33862916..33864503 |
Exon number |
1 |
Exons |
33862916..33864503 |
Genome context |
|
Sequence |
000001 TCTTTGAGGT GGAAACCAAT TGCATGGATC AAATGGTCCT GATGGTGCAT AGAGCCTTAG GTTTGGAAAG AAGTGAAGGG 000080
000081 CCTTGCCGCC TTGCTGGGGA CTTGAGCCTC TCAGCCATTG GTGCTCTCTG GAGCTGCCCG CCCACCAGGG GCAATGGCCC 000160 000161 TTGTTGGCCT CCAGGCCCCC TCCTTCCCTG GATGCTGTGC TGTTCTCCTC TTGGTCTTGT TTCATTGGCT GTGGCAGAAA 000240 000241 CTTTGGTCCC AACAAGGCCC AGGAAACAGA CCCTAGCAAA GACCTGAGGC AACTGGGTGC CCCAGGACCA CAGGAACTCA 000320 000321 TGTGTGCTGT GAGGGCTTTA AGAGCTTTGA AGTGGGGAGT CTCTGACGTG GATCAGGGCT ATGGGTGCTG ATGCTGTCAA 000400 000401 TAAGCCACAC GCAAAGGTTG GGTCAATATG ACTGCTTCTC AGACCCTCTT CGGAGGCAGA CTCTCCCTCA CCTGCCTGGC 000480 000481 CAAATTCCCT CTGGGCAGAA GGACCCTAGG GAGCTTTTCC TGGCCCATGT GGCAGAGGCC CAGGCTCCCA CTCAGACAAT 000560 000561 GACCCCTTGC TTTGCCCACT GAAAGAAGTC CCCAGAAGAT GAGCTCTGTT ACAAGCAGAA CAGAAAAGAA ACAGTGGGAT 000640 000641 TAGGGCTCCA AAAACCCTCC AGAACTATCA GAGAATTCTG GACAGTGGTC CCTGATGGCA TCTGTGTTAG GGGCTGGGAA 000720 000721 CAAGAACCCC TCTCACAGGC ACCTCTACAG GCGGGGTTAA GACTGTCAAA TACTGGCCGA GGCCAAGGGA GACTCTGTCA 000800 000801 TGTCTGAGGC CATAGGCATG TTTTCTTCTG GACTTCAGCG AGAGGCAGAG CCCCCAGCCC CATGCAGTCA CCTCAGCTCT 000880 000881 GCCTGAGAAG AAGCGAGGGA AGCCCATTCC TCCCCATCAG TTGGCCTCTG GGGAGGCAAA GTCAAGTATG TGATGGTTCC 000960 000961 TTACCTGTGC AGGGAAAATG GAACTTGGGA GTCAGCTGTC TGAAGGCATC ACGCCTTGTA TGACCCTTGC AAGCCCAAGC 001040 001041 TACCTACCTG TTCCTGTACA GAAACCCTCC CTGGCCTCAT CCTGTGGGTG GCAAACCCAC ATATTCAGTT ATTGCTGTTT 001120 001121 TCTTCCTTCC TTGGATACTT GTCTCCAATA AATATTTACA GTGGGACCCA CAGATGAACC TTAGCCCCAA ACATAAGATA 001200 001201 GCTATGTCAA AAGGGGTCCT GGGACAGTGA TACCCCAGGG GGGTCAGGCA AAAACAGAAG CAAGCCTCTT GGCCACCTCC 001280 001281 TCCCTTAGCC TTCTGCGTAA AGATGGACTT GCAGGAGGAG AACACACCCT GCAACTACAG AACCTCATGG TACGGAACCA 001360 001361 CCAGGGGATC CTCGCCCACG GCCCTGGGTG GAATTGATGT TGGGAAGATA GATTAGTAGT GAGGCGCATC ACCCCACTGT 001440 001441 GACTCACCTT CTTCTGCCCC CACGCCTGTC CTTCAGACCA TCTCCCTGCT GCGGCAGAGC CACTGAGTTC AGGGAGCAAC 001520 001521 TGTGGGCAGA TGAAATTGGG CTGTGGTGGG TGTGGGAATC CCTGTGGACT TCCAAAAGCA CTTCGGTT |
Predicted Small Protein
Name | NONHSAT110240_smProtein_23:286 |
Length | 88 |
Molecular weight | 9292.0022 |
Aromaticity | 0.0344827586207 |
Instability index | 42.5264367816 |
Isoelectric point | 8.78692626953 |
Runs | 9 |
Runs residual | 0.0348111658456 |
Runs probability | 0.0528371508763 |
Amino acid sequence | MDQMVLMVHRALGLERSEGPCRLAGDLSLSAIGALWSCPPTRGNGPCWPPGPLLPWMLCC SPLGLVSLAVAETLVPTRPRKQTLAKT |
Secondary structure | LLHHHHHHHHHLLLLLLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLLLLLLLLLLLEEEE LLLLHHHHHHHHHLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHH HHHHHHHHHHLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTT TTTTTTTTTTiiiiiiiiiiiiiiiii |