NONHSAT113179
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT113179 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2132 nt |
Genomic location |
chr6-:53362940..53366148 |
Exon number |
2 |
Exons |
53362940..53363765,53364843..53366148 |
Genome context |
|
Sequence |
000001 GAGGGCTGTA ACCTTATTCC AGATATGACA ACCTATGAAC TGTCTTTGCC TTTCCTCACT AAAGTGGGGA GGCAAAACCC 000080
000081 CAATGGCGAG GCAGCAGGGG AAGAGCACTC AACTTAGAAG AACCGGGTTA TAggccgggc gcggtggctc acgcctgtaa 000160 000161 tcccagcact ttgggagtct gaagcgggca gatcacttga ggtcaggagt tcgaaaccag cctggccaac atggtgaaac 000240 000241 cccgtctcta ctaaaaatac aaaaaaatta gccgagtgtg gtggtgcagg cctgtaatcc cagctgcttg ggaggctgag 000320 000321 gcacaaagaa ttgcttgaac ccaggagaca gaggttgggg tgagatgaga ttgcaccact gcactccaac ctgggcaaca 000400 000401 gagcgagact ccatctcaaa aaaacagaag aagaaCTGGG TTCTAGTCCT GCCTTCTGCC TTCGTTACCC TGGGACTCCT 000480 000481 GGTGAGACAC TGCTATATAA AGGGAACCAG CCACCTGCCC TCCCAACACT GTATATCTGT TGCAAGGCTC AGTCACAGAG 000560 000561 GTGCTTTGAA ATGCAGACGT TCCACATGAA TATAAGTTTT GGGTTTTAAG TTTCTCTTAA AATTCCCTGA TTGGTTGAAA 000640 000641 AATCACATAC CAATCCATGA TTGAGTGATA CAGTCCTCAC ATAAATAAAA AGCCTGTTCC TCCCACTGGG AAGCATTTGA 000720 000721 GCAGAAAGTA GAATCCCTAA GGGAATGAGT CCTAATTGCA AAGGTGAGGA AGGTGCTGCA ACTTGTATGT CTGATCAAGA 000800 000801 ATATTTTGAC TTAGTCGTGA TTCTTTTTTT CCCTTAGGTT GATGAGAACA TGAAGGTAGC ACAGAAAAGA GATGCTGTCT 000880 000881 TGCAGGGAAT GTTTTATTTC AGGAAAGATA TTTGCAAAGG TATTACATTA TCTTAGATTT CTAATGTCAG CTTATGCTGC 000960 000961 AACAAGCTGC TAAAGCTCCC CTGACCCTCT TCTCCGGCAG GTGGCAATGC AGTGGTGGAT GGTTGTGGCA AGGCCCAGAA 001040 001041 CAGCACGGAG CTCGCTGCAG AGGAGTACAC CCTCATGAGC ATAGACACCA TCATCAATGG GAAGGTAGGA GGGTGGCCCT 001120 001121 GTACAGTACC CCTCACTGTG CACATCCCCC GGCAGGGAGT TCATAAAGTG TCCTGCTTCT TGTAGGAAGG TGTGTTTCCT 001200 001201 GGACTGATCC CAATTCTGAA CTCTTACCTT GAAAACATGG AAGTGGATGT GGACACCAGA TGTAGTATTC TGAACTACCT 001280 001281 AAAGCTAATT AAGAAGAGAG CATCTGGAGA ACTAATGACA GTTGCCAGAT GGATGAGGGA GTTTATCGCA AACCATCCTG 001360 001361 ACTACAAGCA AGACAGTGTC ATAACTGATG AAATGAATTA TAGCCTTATT TTGAAGTGTA ACCAAATTGC AAATGAATTA 001440 001441 TGTGAATGCC CAGAGTTACT TGGATCAGCA TTTAGGAAAG TAAAATATAG TGGAAGTAAA ACTGACTCAT CCAACTAGAC 001520 001521 ATTCTACAGA AAGAAAAATG CATTATTGAC GAACTGGCTA CAGTACCATG CCTCTCAGCC AGCCCGTGTG TATAATATGA 001600 001601 AGACCAAATG ATAGAACTGT ACTGTTTTCT GGGCCAGTGA GCCAGAAATT GATTAAGGCT TTCTTTGGTA GGTAAATCTA 001680 001681 GAGTTTATAC AGTGTACATG TACATAGTAA AGTATTTTTG ATTAACAATG TATTTTAATA ACATATCTAA AGTCATCATG 001760 001761 AACTGGCTTG TACATTTTTA AATTCTTACT CTGGAGCAAC CTACTGTCTA AGCAGTTTTG TAAATGTACT GGTAATTGTA 001840 001841 CAATACTTGC ATTCCAGAGT TAAAATGTTT ACTGTAAATT TTTGTTCTTT TAAAGACTAC CTGGGACCTG ATTTATTGAA 001920 001921 ATTTTTCTCT TTAAAAACAT TTTCTCTCGT TAATTTTCCT TTGTCATTTC CTTTGTTGTC TACATTAAAT CACTTGAATC 002000 002001 CATTGAAAGT GCTTCAAGGG TAATCTTGGG TTTCTAGCAC CTTATCTATG ATGTTTCTTT TGCAATTGGA ATAATCACTT 002080 002081 GGTCACCTTG CCCCAAGCTT TCCCCTCTGA ATAAATACCC ATTGAACTCT GA |
Predicted Small Protein
Name | NONHSAT113179_smProtein_953:1165 |
Length | 71 |
Molecular weight | 7907.7752 |
Aromaticity | 0.0857142857143 |
Instability index | 53.1971428571 |
Isoelectric point | 9.60650634766 |
Runs | 11 |
Runs residual | 0.0123055162659 |
Runs probability | 0.0462735462735 |
Amino acid sequence | MLQQAAKAPLTLFSGRWQCSGGWLWQGPEQHGARCRGVHPHEHRHHHQWEGRRVALYSTP HCAHPPAGSS |
Secondary structure | LHHHHHLLLLLLLLLEEEELLLEEELLLLLLLLEELLLLLLLLLLLLLLLLEEEEEELLL LLLLLLLLLL |
PRMN | - |
PiMo | - |