NONHSAT115847
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT115847 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2002 nt |
Genomic location |
chr6-:159927977..159930191 |
Exon number |
2 |
Exons |
159927977..159928977,159929191..159930191 |
Genome context |
|
Sequence |
000001 GGGAAGGAGG AATTTTGGCT CAAGACTGAA ACATAGGAAT TCTGCCTGTG TTTCCAGCCT GCCAGACTGC CCCAGAAACT 000080
000081 TCAGACTCAA GTTTGTGACA TCAGCTCTTA CCTGAGTTTC CAGCTGCTGG CCGGCCCTAA GGTTTCAGAC TTGCCAGCTG 000160 000161 CAGCAATCAT GGGAGCCAAT TTCCTAAAAT AAATCTCTTA ACATAAATAT CTTATTGGTT CTGTTTCTCT GGAGAACCCA 000240 000241 GACTGACACA GGGGCTGCGG CAGACACATA CCTTCAGCAA TATCTAAAGG GAGGGCTGCT CCGGGGACAG TGGACCAAAG 000320 000321 GAAACACCCT TGTTGGCTGT AAAGTCTGAA TGGGGCTGTT CTGCTTCACC AGGTTCTATG ACAGAAAATG AACTCAAATC 000400 000401 CCAGGCTTCA GGCAAAGGGT GGTAACTACA GCAGCAAACA TGTCTGGCAG TGCGCAAATA CGTTAAGTAT ATTGTCTCAT 000480 000481 GTCATTAAAA AAAAGACTTT ATTTTTTAAA GCAGTTTTAG ATTTACAGGA AAATTGATCG GAAAGTACAC AGCTCCCATA 000560 000561 TACCAAACCC CCTGCCTCCA TTTTTCCTTG AGATTAACAC CCTGCATGAG TGTGCTACAT TTATTGCAAA CAATGAACCA 000640 000641 AGCTTGAAAA TTACTTTTAA CAAAAGTCCA AGTTTATGTG AGTGTTTATT CCCTGTGTTG TATGGTTCTA GGGGTTTTGA 000720 000721 CAATGGCATT AATACAGTAT CACGCAGAAT ACTTTTCCTG GCCTAAAACT CCCTGCTGCT CCACCTGTTC ATTTCTCTCC 000800 000801 CCTATTTATT TAATTTTCAA AACAATATTA TGAGGTGAAA TTTAAAAAAT TCTTTAATTT ATAAAATTGA TACAATAATT 000880 000881 GTATTTATGG AGTACATAGT AATGTTTTGA AACATGTATA GTGATGAAAT AGAATAATTA GCATATCCAT CATCTCAAAC 000960 000961 ATTTATCATT TCTTTGTGTT GGGAATAGTC AAAGTCCTCT TGAGGTGGGA GAATCACTTG AACCTGGGAA GCAGAGATTG 001040 001041 CATTGAGCCG AGATCGCGCC ACTGCACTCC AGGCTGGGCA ACAGAGCAAG ACTCTGTCTC AAATATATGT ATATGTGTAT 001120 001121 ATATATATAC ACACACATAT ATACATATAT ACACACATAT ATACATATAT GTATACATAC ACATATACGT ATACATGTAT 001200 001201 ACATACACAT ATACGTATAC ATGTATACAT ATATACGTAT ATGTGTATAT GTATATATAC ACACATATAT ACATATATAC 001280 001281 ACATATATAC ATATATACAC ATATATACAT ATATACGCAT ATATACATAT ATACGCATAT ATACACATAT ATGTTTTATA 001360 001361 TATATATATA TAAAACAAAT TATTGTTAAC TATAGTCAGC CTACAGTGCT ATGGAATATT AGAACTTATT CTTCCTAGCT 001440 001441 AGCTGCAATT TTATATCATT TAACCAATCT CTCCCTAGTC CTGCCTCCCT GCTACCTTTC CCAGCCTCTA GTGTCCATTT 001520 001521 ACAGGTGAAT AGATAAAGAA AATGCAGTGT GCATACATAG TGGAATACTA CTCAGCCACA AAAAGTATGA GATCCTGTCA 001600 001601 TTCACAGCAA AATGGATGAA CCTGGAGACA TTACTTTAAG TGAAATGAGT CAGGCATAGG AAGATAAATA CCACATCTTC 001680 001681 TCACTTATAT GTGGAGGCTA AAAAAGTTGA TCTCATAGAA GCAGAGAGTA GAACACTTAC CAGAGGTGGA ACTTTATAGG 001760 001761 CGTTGTTACA ACCAAGACTC AGATTGCTCC GCTTCCCAGG TTCACACTAT TCTCCTGCTT CAGCCTCCCA AGTAGCTGGG 001840 001841 ATTACAGGTG CCCACCACAA TGCCCGGCTA ATTTTTTCTA TTTTTTAGTA GAGACAGGGT TTCACCGTGT TAGCCAGGAT 001920 001921 GGTCTCGATC TCCTGACCTC GTGATCCGCC CGCCTCAGCC TCCCAAAGTG CTGGGATTAC AGGCTTGAGC CACTGCTCCC 002000 002001 GG |
Predicted Small Protein
Name | NONHSAT115847_smProtein_1106:1372 |
Length | 89 |
Molecular weight | 11397.4415 |
Aromaticity | 0.284090909091 |
Instability index | 79.3215909091 |
Isoelectric point | 8.35052490234 |
Runs | 10 |
Runs residual | 0.0177272727273 |
Runs probability | 0.0487546369899 |
Amino acid sequence | MYMCIYIYTHIYTYIHTYIHICIHTHIRIHVYIHIYVYMYTYIRICVYVYIHTYIHIYTY IHIYTYIHIYAYIHIYAYIHIYVLYIYI |
Secondary structure | LEEEEEEEHHHHHHHHHHHEEEELLLEEEEEEEEEEEEEEEEEEEEEEEEEEEELLHHHH HHHHHHHHHHHHHHHHHHHHEEEEEEEL |
PRMN | LHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHH HHHHHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | TTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTTTTiiiiiiTTTTTTTTTT TTTTTTTTTTTTTTTooooooooooooo |