NONHSAT118706
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT118706 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1378 nt |
Genomic location |
chr7+:1200073..1204261 |
Exon number |
4 |
Exons |
1200073..1200259,1201988..1202179,1202598..1203131,1203797..1204261 |
Genome context |
|
Sequence |
000001 CGGGCGGGCG AGGAGCGGGG AAGCTGACTC AGGGCTGCGG CCGGGGTCCT GCGGGGTAGG AGCGCGAGGC CGGCCTGAGG 000080
000081 GAGGAGGCCT AGCGACCCAT ccggcgcctc ccgccccggg cacccgcccg cggccgcgcA TCCTGCGGGC CCCAGGAGGC 000160 000161 CTCCATCTCA AAACAACGtg tttttagaga actcaagggc tgtgaaaaga gcaggacctc accagctgca cggcggtggt 000240 000241 gactggctcc atcttgctgt ccctcccaat cacacaacat ctccccttga aggctctgcc caggcccgga ctcccacctt 000320 000321 tcaagatgtc tggatcagtg caggacctcc tccttggcca catcgctctc cttggactgt gttgactcac ctgtggagtg 000400 000401 gtctgagcct gaatgcccgg ggctgtggcc accgagtgaa cgggctgtgc taaggggaat tgccaccttg ggaaacctgt 000480 000481 gtagttgcgg cttttctgat taagtatcaa taaaagtctg accttgtgaa aaaagcaaac gtgagtggcc ctgcttatgt 000560 000561 ttcaccttgc gttgctcagt gataGTTCTG CAAAGTCGCA GGAAACCTGG AATCATCTAA TTATCGTGAG TGTTGGTGAG 000640 000641 TAACACCCAT AGGCACTGgc tcccggggaa atacagagtc aggttcctcc gagccgctgg ccacagcatt tttgttaagc 000720 000721 agttcatcgt taaccttgtt gtacatgtct ctctctcaag gttccttatt taataatgtc tagttgattc attaacatgg 000800 000801 aattcatggc cagtacctct gtcactcatg cctgactgaa gttgatcagc acgtcttttt ctcccttagg cacatgacag 000880 000881 ccttcttgca atcaagaaac taCGTGTggc cagGATCTCA TCCACTATCA CAGTTTCAGC TTTCCCCAAA CTGGAATGTG 000960 000961 TCTTTGCAGA CGCCCATCCT TATTAAAGGG CAAAGACTTC TCATACACCT AGGATGGATC Ttatattctt ggcgggactg 001040 001041 cagagaaggt gccgtgtcct gagtcctcat gtcagggcac aggcttccag ccagttctac ctgggttatg tttatctcaa 001120 001121 ttccctggtg gtattggtgt ctgctgggtt ttgccagaat gaagacaccg tgttttcatt tgtcagttga ttcgtatttt 001200 001201 ccaggaagac attctgagat taCAGCATtg tcttagtcaa ggtgctgcag aaggacagaa ctaataggat atatgtacat 001280 001281 atgaaagaaa gtttatgaag aactggctca caccatcaca aggcaaagtc ccatgacagg ccatctgcaa gctgaggagc 001360 001361 gaggaagcca gcagtggc |
Predicted Small Protein
Name | NONHSAT118706_smProtein_1013:1189 |
Length | 59 |
Molecular weight | 6517.4707 |
Aromaticity | 0.137931034483 |
Instability index | 40.5277586207 |
Isoelectric point | 7.82427978516 |
Runs | 11 |
Runs residual | 0.0330617658204 |
Runs probability | 0.0172231054584 |
Amino acid sequence | MDLIFLAGLQRRCRVLSPHVRAQASSQFYLGYVYLNSLVVLVSAGFCQNEDTVFSFVS |
Secondary structure | LLHHHHHHHHHHHHLLLLLLEEEELLEEEEEEEEEEEEEEEEELLEEELLLEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooo |