NONHSAT119478
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT119478 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2609 nt |
Genomic location |
chr7-:22689579..22705152 |
Exon number |
5 |
Exons |
22689579..22690772,22692565..22692770,22692866..22693033,22702701..22703535,22704964..22705152 |
Genome context |
|
Sequence |
000001 GAGGTAGCCT TGGCGACTTT CGAGACTACC CAGGCCGAGC ACACCCAGCC CCCTCAGACC CAGGCATTTC TGCGTCCTCT 000080
000081 GGTTTGGAGG GAACCCAGGG GGCTGAGGTG AAGCAAGCCA GGACTGTTTC TCTGACTCTT CTGGAAGACG ACCCGCTGCT 000160 000161 CGGGCCGCCT CATCACTGCG GGCCACGAGT GCCCTTCTTC ATTCCAGACA TGGTGCTTTG AACAATTTGA CTTGGAGGCA 000240 000241 AGATTGCGAT ATAGAAAATG GGCCACTGTG GAGGAGATAA GTAAATGCTT TGTCGCTTCT AAGTGACAGA GGAAACTGAT 000320 000321 CACGATTGGT ATACTTCTGA CATGTAACTT TCTATATCTT TAGAAGATCG TCAGGGAAAT AGAAAAAAAA ATCTGAAATC 000400 000401 TCCAAGTAGG TTCTACTTTG TGTGGTTCCA ACTAAATGAA CTAAATTTGT GTTTAAAGAT TGTAAGTCTA CATGTAATGG 000480 000481 TGAAAGCTGA AGGTTTTACA CTGCACAGAA ATAGTGATTT CCCCCCGTGG AGGGCAAGAA GACCGGAATA GGAGGGGTGG 000560 000561 GTAGGGGAAT CAATGTGTAG GCCAAATATT TGAAATTTCA GTGCAATCTT CTTAGTCATC ACTTTCATTT CTGTCTTCTA 000640 000641 GGGAAATCTG ACACAGCTAG AAAGCAATGG AAAACACTAA GAGTTGCATC AGATGTTGAA GAGGAACTGA TATTATGGGA 000720 000721 TAAAAAATGA TTCTTTAAGG GAGATAACTG GTCATTTAAA GGTAGCAGCC TTTTTGGGAA AAGCTAACAA GTGTTCCCGA 000800 000801 GGCCAGCCTG TCTCTTGTTA GCAACATTGG CCCTGTGTTA GAAGGAAGAG TGGATGTGTT TTGATGCTAT TCCTTTTCCT 000880 000881 CTCAGCATAA ATTTGCAAGC ATGTACTGTA AATGAATTTT CATGTCTTTT CAGGATGTTT CCCTATAGAG CAGTTTCTAG 000960 000961 ATTGACTCTG TGGAACAGTC TACAATAGAT TTAATATGGT TAGGATTTTG CCTAATTCTG ATTGTAGGTC TGGGTGAGGC 001040 001041 CTGAGAGTCT GCATTTTCAA TAAGCATCTA GATAGTGCCT GCTGTTTATG GACTACACTT TGAATAACAA GGACTTAGAA 001120 001121 GATGAAGAAC AAAGAGCTTC ATATAGATCA GCAACACTCT TTGGTGTTCT TCCTCCTGTG TTCAAGTCAG TGATTACATA 001200 001201 TCCTTTTTGG ACCTCAGTTT CCAGTCCTGC CAAATAAGGG ACTAAGGCTG GATCATGTTT CAAGCTGTCC TGAAGAGACC 001280 001281 TCTAACTCTG CAGAGAAGCC TCAGGACCCC ACCCCCTCAC CCCAAGAAAA GTGTGAGGCT AGTGTGAGGA GGAAGAGGAG 001360 001361 CAGAGAAGCC AATGGAGAAG GAACTATTCT TTAGAAAGGT TTCAACGGTG ACCTGCCAAC AGCTCCCAAA TCTACAGGTT 001440 001441 TCACCCAATT TTTGACTCAT GACCTGTTGA CAACCTCCGC CTGGATATGT CATGGGTTTC CTCAAAACCC AACATTTACA 001520 001521 AAACTGAACA TCCTCAAAAC ATCTTCCCTT TCTCACCATT CCTCTCAGTT AACAGCATCT CCATATACTC CATCACTTGG 001600 001601 GTGGAACATA TCAGAGTCCA CTTAGCTTTC TTCACAAGCC TTTAATGGAG GAAATATTTA TTGAGTATCT ACCATGTGCC 001680 001681 ACCCACTGTG CCAACCACTG TCCATATGAT GGTGAATAAC CAAGACAAGG GCTTGCTCTC ATGGAGCTTG CAGTCTTGTG 001760 001761 GAGAAAAAGA TAATAGAAAG TAAAGACATA CTTTACTTTC AGGTAGTGAG TAGTGCTGAA AATAAAGCAG TGGGAGAGAG 001840 001841 AGTGATAGTG GAAGCTACTT TAGAAAATGT AGCCAGAGAG GGCCTCTCAG AGAGACCACT TGAATGATGA GAAGGGCCGT 001920 001921 GAAAAGAAGG GGGATGATAA AGGAAACTGC AAGTACCTGA GCCCTGAGAC AGTTAAAAAA AACATCTGAG AGACCAGTGT 002000 002001 CTGGAGTTTG GGCTGAGCAG AGATGAACTT GGCCAAACCA CGCTGGACTT GTACAATGTG GTAAAAATGA TGGATTTAAC 002080 002081 TGCACTTTAT CTTAATATAT CTCTTTTATC AACACCTTCC TTTCCACGCT CCCAGCCGCA TTGTTTATCA AGAACCTGTT 002160 002161 ACATTTCACT TGACTATTTA CCTTCTCAAC TTTTCCAACT CCTCTTCCTC AGGCACCTTT GCTGGCTCTT CTCTTTCTCT 002240 002241 CTTTACCCGC TATCTCTCAG CAGGCCTCAG ACTTCTCTCC TGTCTCTCCC AAGAGTGCTA CCCTAGACCA GCCTGCCTCA 002320 002321 GATTCTGTTT CGGCCTAGAA GGGCCAAACA TCTGGTTTGT CATCTTCCTT GGGTTTTAGC ACATTATCAC ACACACATTA 002400 002401 GGTCTTAGCA CATTATTAGA ACTCGCAAAT CCCTTATTTG ATAGAAGAAC TGATTTCCTT TTTAACCCTA ATTCCTCTCC 002480 002481 CCTACCCCCA TTTGAATGTG TATCTTTTCA TTTGGATGTG TTCTTGTGGA ATGTCCATTT TATTTGTATG CACTTATTTT 002560 002561 AAATTCTGTA AATGATATTA TAGTATCCCT TCCAAAAAAA AAAAAAAAA |
Predicted Small Protein
Name | NONHSAT119478_smProtein_2066:2305 |
Length | 80 |
Molecular weight | 9162.7848 |
Aromaticity | 0.126582278481 |
Instability index | 63.853164557 |
Isoelectric point | 9.05584716797 |
Runs | 7 |
Runs residual | 0.0516733136813 |
Runs probability | 0.0421051303405 |
Amino acid sequence | MMDLTALYLNISLLSTPSFPRSQPHCLSRTCYISLDYLPSQLFQLLFLRHLCWLFSFSLY PLSLSRPQTSLLSLPRVLP |
Secondary structure | LLLHHHHHHHHHHHLLLLLLLLLLLLLLLEEEEELLLLHHHHHHHHHHHHHHHHHHHLLL LLLLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHH HLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTT Tiiiiiiiiiiiiiiiiii |