NONHSAT128288
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT128288 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1692 nt |
Genomic location |
chr8+:110310827..110328791 |
Exon number |
2 |
Exons |
110310827..110311158,110327432..110328791 |
Genome context |
|
Sequence |
000001 ATGTAAATAA AAGGCATGTA AGAGAAAGGG AGACAAGTAT TTGTCATAAA TATAACCCAG GGCTAATATG TATAACATAA 000080
000081 AAAAAGCCCT TAAAACTTAA CAAGAAACAT GATTATTTAA AATGTTTAGG GGGATGGGCA GATCATGACA GACGGGAGGC 000160 000161 AGGACTAAAT TGCAGCTCCA ACTCTGATGG ACAGAGCAGC CTGTGGAGCC TCGCATCATG ATTTTTTGCT CCAGAATGAC 000240 000241 TGCAGGAATA AATCAGGAAA GCCGAGAGAA CCCGCAGACC CTCTGAAGGA AGTGGATTGC TCCTACAGGA CCCGGGAGAC 000320 000321 ACCCCAAATA CTGCATTGCA GCTCAAAAAA TGTTACTCCG AAATAATGCC ACTTCAACAT GAAGCAGCCT CAAGGTCTTT 000400 000401 CTGGCCTCCC CTCCCTTCCT GTTTCTCCCA AGCACAGGAT GAAGCTATTC TCTGAAGTTC CTTCATCTAC CTATAAACTG 000480 000481 GACCTGCCAA AGAGAAACAC AATTGCTTTC CCTGAAATTT CATTAACCAG AGAAGATTAA AACTTCTATC ACAGAGGAAG 000560 000561 AGGCTGAAAA TTAAACACCC CACCTACAGC CCAGATGAAC TTAGTCACAA ACCATTGTCT GCTCTCCATC CCATTCAATT 000640 000641 TCCAAAGAAA AGTATTAACT AATCATTGTC TGAGCATCAG GCCCATTCAT TCATTTCCCC CTAAAGATCA TTTGCTATCC 000720 000721 CGCATGTCCC CCATGTCCCC TACTGATCAA GCATAAGAAG GGTATGAATA AGGGTATATA AGCATCTGTA CCCCACTGGG 000800 000801 TTACTGGGTA GTCATTTTCC TGGATTCTGC CATGTACACA TGTTAAAATA TATTTATATG CCTTTTTCTC ATGTTAATCT 000880 000881 GCCGTTTGTC AACAGATTTT CAGCAAACCT TCTAAGAATA AAGGGGACAC TTTGCCTTCG TCTCTACACA GGTAAGTAAG 000960 000961 TGGTCCCCTA ATAATTAACT CAACTGTGAA AACAAGCTGA CATTCAGGCC TAGAGAGGAA CATACTGACA TAAAACTGAG 001040 001041 CTCCTCTAAC AAATAGTTGT AACATGTCAC TCCAAGATGC AACCTCACAC ATATATTCTT ACAAATGAAA TCCAGTAACT 001120 001121 GCCCCTTAGA CCTTTAAGTA CAAATTAAAG AGGCACTATA AGATGACACT CTTTTAGTAA CAGAAACAAA TTAGCTTTTC 001200 001201 AGGTAAATAC AAAACAAATT ATTACAGAAA TAATTTCCTA AATATTAAGA AACGGAACAC ATTACTTTAA AATAAGCCAT 001280 001281 AATATATAAA ATAAGGATGT ATTAAAAAAC CAAAGTTTAA ACACATTTTT GCTTTCCCAA GGCATTTTCT ACTTCCTTAG 001360 001361 CACACTTCTT TCCGAGGGAC ATTTCCCTAA AATTAAGGAC TGTAAACCTA CAAGTTAAAC TTTTTTGTAA GGAGAGTATT 001440 001441 CTGTCTTTAT AAACCAGTAT GTAGACCTGC TGCCACCTGT TGGCTCCAGA CAGTCTGAAG ACCTAGCAAC CTATGGCTTT 001520 001521 CAAGTGTTGG GTCCCATAGC ATTCACTTTT ACTACAACAG TTCAGGTTTA ACAAAGGTGG TCATTTGTAC ATCAGTCACA 001600 001601 GAAAAGGAGC CTGTCTAGGA TTTGTGCACG TGTGCCTTTG ATGAAAACAA AAGAAAACAA AAAAAATTAT TAAACAATAA 001680 001681 AATGGATATT GG |
Predicted Small Protein
Name | NONHSAT128288_smProtein_839:958 |
Length | 40 |
Molecular weight | 4619.566 |
Aromaticity | 0.153846153846 |
Instability index | 46.6692307692 |
Isoelectric point | 10.2977905273 |
Runs | 7 |
Runs residual | 0.0107466063348 |
Runs probability | 0.0442627501452 |
Amino acid sequence | MLKYIYMPFSHVNLPFVNRFSANLLRIKGTLCLRLYTGK |
Secondary structure | LLEEEEELLLLLLLLHHHHHHHHHHHHHLLEEEEEELLL |
PRMN | - |
PiMo | - |