NONHSAT128383
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT128383 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2799 nt |
Genomic location |
chr8-:117947899..117950697 |
Exon number |
1 |
Exons |
117947899..117950697 |
Genome context |
|
Sequence |
000001 TGCACCGCCC ACTGGAAGGC GCGCGTCAGC CGTCGTCTGA GGTCCTCCAG CAGCGGGCTG GCGGCGAGGG CCTCCTCCTG 000080
000081 GATGTCCGTG CTCCTGCCGT CCCCGAAGAA GTCGCACGCG GGACGAGGTG GGAACCAAAG CTCCGCTCTA CCTGGGAGTC 000160 000161 CCTGGAGCCC CTGGGAAATT CTCTCTCTGC AGCGGCGGAA GTCCCCGGGG CCCATCGCGG AGACGCCTGG TCACTGCTCT 000240 000241 ACCGCTGCTG CTGAAAGATG AGTTTCTAAG TTTGATGTTT AGGGCGGGGT CAGGGCGGGG GCGGAGGTAA TTCAAGGACC 000320 000321 CTTGCCAAGT GGGATGCTGC AACTGCCCCG CCATTCAGAG ACGCTCCTTT GCTCCCAGTC CCATCTTAGC CCTCCATTAG 000400 000401 CGACAGAGGA AGGAGGCGGT TCCCATAACT CCAGGAGAAG TTTAAGCTGA GTCGCTTTTT TCTGCTGCTT GCATTGAAAG 000480 000481 GAAGTCTTTC TAAGGAGAAG GCTTGGTAAC TGAGCAGTCA GCCTATGTAA GTGGAAGTTG AGGTACAGGT GGAAGGTTTA 000560 000561 TGACCAAAGG TTAGAATATT TCAACCCAAA GCCTTCCTGG TTGCCTTGAT CGTCTAATAC GTCATTCCTT AAAAACAATT 000640 000641 TTTTTTCTTC CTACTCTGCC AGGCACTTTG CCAAGTTTGG GGAATGCAAA GGCTTAATTA GACCCCTCAC CTTTCCCCAG 000720 000721 GTATTGCCCG CAGTCAAGGG GGAGAGCCTT GGCCCTGCTT GCTAGTTAGA ATGTACCTTC TACAGGTTCA GTAAGGCATA 000800 000801 CCTGGAAGTC TGAGTCTCCA TGCTCCTTTC TATTTTGACT CCTGTCTGCC ATGTCCACGT TTATGAAGGG GTTAAAATGA 000880 000881 AAAATCAAAA TTCCCCTTAG CCCAAAGTGT GTGTGTTTAA TTCCCAACTA ATAAGGTTTG GCTCTGTGTC ATCACCAAAT 000960 000961 TCCAGTGGAA TTGTAATCCC CAGTGTTGGA GATGAAGCCT GGTGGGAGGT GATTGGATCA TGGAGGTAGA GTTCTCATGA 001040 001041 ATGGGTTTAG CCCCATTCCC GCCTGGTACT TTATAGTGAA TGAGTTCTTA CCAGATCTGG TTGTTTAAAG TGTATGGCAC 001120 001121 CTCCTCTCTC TCTCTCACTC CTGCTCTGCC ATGTAAGACA CTTGCTCTCG CTTTGCCTTC CACTATGAGT AAAAGCTCCC 001200 001201 TGAGGCCTCC CCAGAAGCAG ATGCTGCCAT GCTTTCTGTA TAGCATACAG AACCATGAGC CAATTAAACC TCTTTTCTTT 001280 001281 CCAAATTACC CAGTCTCCGG TATTTCTTTA TAGCAGTGAG AGGACAGACT AATACACCAA CTCCAGGTAA TCATGTGCCA 001360 001361 ATATTACCTG TATATCCTTT ATCAAAGAAC ATATTCTGCC TCTTTTTGAT CTAATAGGGA ATTTCTAAAA AGGAGTGAAC 001440 001441 AATCAAAACT TTTGTATGAT CAAAGAATGC AATTACAAAA AAAAACAAAA CATAGTTTAG ACACAACTCT CATCTTATTC 001520 001521 ATCATTCATT CATTCATTCA TTCAAAAGTT ACAAGTCACT TGCAATGTTC CAGGGTCCAT GGTAGGCATT GAAGGCAATA 001600 001601 ACAACTGATT TTTATTCATG CTTAGTATGT GCCAGGCAAT TTTTATGTAT TAATCTTCAC AGCAACCTTG TGAGGTAAGT 001680 001681 ACTATTAGTT TCTGCATTTT ACAATTGAGG AAACTAAGGC AAGAGATTAA GACGTACACC AAAGATCTCA AAGCTGGTAA 001760 001761 GGGATCCACT GGAAATTTGC ACCTAGGAAG TCTGGCTTGT GCTCCAAACC ACTGGGATAC ACCCTGGATA CGCTTTATCT 001840 001841 CCCAAAGAGG AAGAGAGTTG CTCAGTTTAT ATGTTGCATG AGTGAGTGAG TAAGAGTGAA TAAGTGTTTA AATTCACTAT 001920 001921 GTTCATAAAA TTCGGCTCTA TTGAAATGGC TTAAGGCTCA ACTGGATAAG GAACAATACA GGTTACTCAG CCTGTGCAGA 002000 002001 TAATCTACTA AATTGAACAG CTTGCAATAG TTTACAACCC AAGCACAGTA AAATTCCTAC CATTGTATAT TGCTTCATAA 002080 002081 AGATTCCCTA GAAACATCTG AAGATGTGTT GTCTTGGTAG AAATTATAAA AATCCATGTG GTCTGCCATG CAGCAATGGA 002160 002161 GTGTGAATTT AGGGTTTTTT GTTTGTTGGT TGGTGATAGG TTGATGGGGC TTGAAAACCA CCACTAGTCA ATGTACAATA 002240 002241 TAAACGTTTA AAATGAATTT TTTGCTATGA TTTTTCACTT CCATTTCCAG ATCATTTACT TCAACAAGAA TTTCAGTTAA 002320 002321 GTTCAATTTA ACTCAACAGT GAATGGCGCA TGTTCAGTGT TAAGAATTGT GCCATATGAG GGAGATACAA AGATGAATAA 002400 002401 GGCATAGTTT TTGTCCCCCA GAAGCTTAAA ACCTGAGGAA GCAAATTTAT TGATTCATTC ATTTAACAAT ATTTATTTAA 002480 002481 TGTCTTATTA TGTACCAAGC ATTACACAAG GTGCTCAAGC TACAATGGCA AACCAAGGAG ACAAAATGTT TTTTTAAAAT 002560 002561 AAACTGGTTT ACCACAAATT AATAATTTTC CTCTATAGGT TAATTTTTCA GTTGTGGTAC ACCTTGAATT TTACAATTTT 002640 002641 TTTTCTTTCT CTTACACAGG CAAAGCAAAT TGAAGAATTG GAGCACTGAA TATAACATCC ACAGACATTT GAATTAGAAA 002720 002721 ATGTATTAAT TATTTATTGC TGCATAACAA ATTACTCCAA AATTCAATGG TTTAAAAAAA TAAACATTTA TTTTCTCTG |
Predicted Small Protein
Name | NONHSAT128383_smProtein_1079:1312 |
Length | 78 |
Molecular weight | 8606.1246 |
Aromaticity | 0.116883116883 |
Instability index | 53.6961038961 |
Isoelectric point | 9.56695556641 |
Runs | 9 |
Runs residual | 0.0191981931112 |
Runs probability | 0.0395395395395 |
Amino acid sequence | MSSYQIWLFKVYGTSSLSLTPALPCKTLALALPSTMSKSSLRPPQKQMLPCFLYSIQNHE PIKPLFFPNYPVSGISL |
Secondary structure | LLLEEEEEEEEELLLLLLLLLLLLHHHHHHLLLLLLLLLLLLLLHHHLLLHHHHHHLLLL LLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |