NONHSAT129338
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT129338 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
5083 nt |
Genomic location |
chr8-:139449101..139489699 |
Exon number |
2 |
Exons |
139449101..139454027,139489560..139489699 |
Genome context |
|
Sequence |
000001 AAGAGGGATC TGTGGTGATT TGGGAGCCAA AGGAAGGAGC TCTTCACCCA GTGTAGGGTA TGGTTTGTGA AGGTATCCCT 000080
000081 AGAGAAGGTG ACTCTGCGGC TGAGCTTGAA GGAAGAGAAT TGGTAGGTGA CAAAGAAGAG GTCCACTCAT ATGATCGAAT 000160 000161 TTGAATCAAG GTCTCAAGCT AATCTAAGGA AAAAAAAAAA AGCAGAGAAG CTATATGGCA GAAAGCAGAG AACTGGAAGG 000240 000241 GAAGTCACAA AAGAAGAGAA CATACTTGCA GGCATTGTTT CAGGTGGTGA GTGAAATCTG CAAACAAACA GAAATTCTTT 000320 000321 CTCTCGTGGA ATGTATGTAC TAACTGGAGA AAGCATTGTT TAAAAAATAA GCAAATAGGA TGTCAGGCTG TGTTCAAGAG 000400 000401 AGTGTATTTA GTTCTTCACA CAATAGTGAT GCTGATGGAT AAAGATTTCC AGTTTGGTCT CAATCCAATA AAACACCCCC 000480 000481 ATTCAAAGTG TCATTGTCCC ACTCTTTCCA ACTGATGCCC TAAAGCTCAC AGAAGAGACT TGTTGGGTGT GCAAATTTGG 000560 000561 CTTTCCTCAT AATTCTGCAA CCTGCATAAG AAAGTTTTAG TTCTGATTTT CAGCCTTATC TTCCCTGTGA CTACATGAAA 000640 000641 TAAGAGATTA TTTTAGGGCT ACCCCAGAAA CAAACTTGTT CTCTCATCAG AGCTGAGTTG ATAGACAGTC TGAAGGCTAG 000720 000721 ATCTTGTTAT TTTCCTCTGT TTACTCTCCA GTGCTGTAAA AAATATCCAT CCCAGCATGC TTGTATTCAT CATTAACATT 000800 000801 GTAGCCACGT GGAGCAGCCA CTCGGTCATC CAAGGCACTT GCTAGAGTGA GCACTTCCTC CACTGAGGCT GGAGGGTCTA 000880 000881 CGATGACTTC ACTCACATGT GTGGGGGTCT TGGTGCAGGC GCTAACTGTT CCTCTCTTTC TTTAAGGTCT GTGTTTAGTA 000960 000961 TTCTAGTGTA GGCTTTGTTA CATAGTGGCA GGAACACTCC AAAATAGCAA AGTAGAAGGC TCAGGAACTC ACACAGTTTC 001040 001041 ACTTCTGCAT ATTCAGTTAC CACCCAGACC AAGGGGCATG GAAATTGGCT CTACCTCTTG AGTTGCATGT CATGAAATAT 001120 001121 CATAGCCACT TTTTCAATCA ATTAGAGGAA GCCTACAGTA TGAGTATATC TCAGAAATGT GATAGATTTT AAATTGATCT 001200 001201 TGCCTTTCTA AAGATGTTTC CCATCTATAC TCTGTGAGAG ACACCTCTAA AATATCTCAT GTCAAAAAAG TATTGGGTAA 001280 001281 GGTGTCCAGT AACCTAGGTT TGTGGTCTGG CTCTGGAACT GATTTATGTT ATCTTGTAAT GATAGCAATG ATGATGATTT 001360 001361 TGGTGATGAC GGTGATGGTG ATTTTATTAG ATATGATTTA GACAATGCAG TTAGTACTTT CATGTGCATT ATTATAAATA 001440 001441 TTTAAATTCT AATTTTACCT TTTTTGGACT TTTGTATGTA TTATCTGTTA AATATAAAGC CCATATTTTA CTTTTGTCCT 001520 001521 AGATATTTGT CACTATCTTG CACCCATTTC TCCCTCCTAA TAGCACCCAG ACATTCCTCT AGATGAATTG TCTCTTGAAT 001600 001601 GTATGCTCTT GGTTGAAAGT AACCCCAGAA ATATGCCTTC TTCTGGGGTG GCTTAAGGGT TCCTGAGACA TTTATTTGCA 001680 001681 AGAGCATAGC CAAAAGCTGG GGCGATGACC TTAATATGGC CAGGAAGCTA CCTCTCACCT GGAACTTTAA GTCTTAACTG 001760 001761 AGATGAGTCA ACACAAAAGA AAACATTATA GTTCCTGCAG CCCAGTGGTG GGAACCTGGT GAGCTTGTCA AGTTCTCACT 001840 001841 GATGAGACTG GCAAGAACAC CCTGATAGCT CTTAGTTCTT AGCCTTGTTC ATCACACTAT CTTCCCTATG ATCCTCGCAC 001920 001921 CTGCACTCCA GTTCTCCAGT GGGTCCATTC TTGCACAGGT AAGCCAGGAT TAGTGTTGGC ATCCCAGGAA CCATGACTGC 002000 002001 TTCAGTTGTC TATTGAATTA CTTTAGAAGT ACCTGGAGTG ATGGAAAGTG CTTGGCCAAA GTTTACAAAG CCCTGTAGCC 002080 002081 AATAACTGGT TCCAAATTTC AGGTCTGCCT TTTCTGCTCA CATTTCAACA TTGGACAGTC AAACTTTCTA AGCACGAATT 002160 002161 TCTTCAGTTG TAACATGGGA CACAATAATA CATCCCTAGC AGAGGGGTTA GGATTAAATT AGAGAGCAGC TGTGAAGCAC 002240 002241 CTGGGAGAGC TTCTGGCACA CAGTAACAGT GGAAAGTTCT GGCACTACAG TAGAAAGTTC TTTCCCTTTC TGTTAATGTT 002320 002321 AATGCTTCAT CCCCATTCAC AGAGACTGGA GTATCCCTTG ACTACTCCAG TCAAAGGGAA ACCCAACATG ACATGTTCCC 002400 002401 TCCCCCTAGG AAATGTCCTC CTCTGATGTT ATGAGGTCGG CCTATGAAGC TTTACCTTGG AGTTTGAAGA TGAGACTGGT 002480 002481 GTTTGTAACC CATGAGGACT ACTGAGGTCA CATGGTGTAG TGGAATGAGA ATGGGATTTG GGATCAGGCA GGTCTGAATT 002560 002561 CATACCTAAT GATGACATAT GTGATTAGCT GCTTAATCTT GAACGTCATT TATTGTCCTA TGTGCTATGA TTCTCTCATA 002640 002641 TTGACCACAC AGGGCCATTA TGAAATGATA ATTGGTAATT TACATGCAGG TTCTTTGTAA CCTAGAAGAA TATTATCTTT 002720 002721 GTACTGGAGC CTCCTCAAAG ATTTTCAGGG ATATACACAC CAGAAACTTT GCCTTGTACA GCTCCTGGTG GATAAATGAA 002800 002801 GGCCTTCAAA TGGGCAGGAA ATAATCCAAT TTCCATGAAA GTTAATTGAG CTCTGTGTTT TCTAAAGGCT AATAGCCTGG 002880 002881 TGAGAGATGT CCTGAGTCAA GCTAATGTGA TGACCCACTT GTTTTTTTAG GTACCAGTTA TGGAACAGAA GCCACATCTG 002960 002961 TCACTGATAA CCTGTTTGTA TAGTGACCTC TTCCACCCCA CCCACAAGGT TGCCATGGCA ATTTTAGGTC AAGAAGATCA 003040 003041 TCCCATTGAA AGACAGGAAA TGCTAAGGAG TAAAATGCAG TCCCCAGGAA ACCTGGTTTT AGTCCTTGCT ACATATTATT 003120 003121 AAATGGCTGG TCCAGTATCT GGTTGGGACT ACTGTGCCAG GCATCATCCT CAGGTGATGT CTGATCATCC TGGCCTGTCT 003200 003201 TTGGCAAGAA TCCAGTTCAG TGGGTTTTGC CAGAATCCTT TTACTTCTAA GGTTTTCTCT TAGTTGTTTT CCATCCTCTG 003280 003281 ATCCCTCTCT TGTTCCTTGG TTATATATTT CCCCTTGCTT GTGCTGTATT CAAAATTGAA CCCAGTTTTA TATTGAAGCA 003360 003361 TCTTTTCTCC TGTTTCAATA ATCCAGAATA GAGTCTGTTT CTACCACTTT AACTACTGCC TAGCTCTGTT TTTTTCTTTG 003440 003441 ATAGAGCTCA GAAGTGCAAT TCAAATTTGA TTTGTAGATG TAGCAGCAAT CAAGATTTAG CTGGTATTTG AAGACACTCA 003520 003521 TATTATCACT CTTTCTACTA CCCTTTATTA TATTTTTTGA TTCTGCCCCA CATTATTTTT GCTAAGGAAG GAGAGTTCCA 003600 003601 GGAACTCTCA TGGAGTACTT GAGACATGGC TCTTCAATAG CCACCCGGCA CCTTCTCTTA GATAAGAGGT GTGAAATTAT 003680 003681 AGGAGCTCCT TCTCGCTTGA GAGCCCCTTG AGTAATAATT ATTTAAAAAA AGCTGTTATA ATAAAACTTT GCATTTAAAT 003760 003761 TGCCTCTTAT TCTTAGGATG TCAAAGTGCT TTACAAACAT GAATTGCTAG AAACCTTTTA GGTTAATTAA AATGAGCAGG 003840 003841 TTTCCCAGAC AAAGAAGGTG ACTGTTTTTG TACTCTCGGG TGTTTTTACA GGTGAGCGAA TTGAAGCACA AATAAGTTCT 003920 003921 TTGACTAATC AAATAGAGAT GTTCTGAGAA CAGGTGATTT CAGCATTAGC ACATCAACCA TGCTACCAAA TTTCATTGCC 004000 004001 CTTCGGAATT ATAATGACAA TAATGTAGTG ATTCCTGAAT TCTGGTATTC TTAATAAGAA TATTTGTGCT ACTATTTACT 004080 004081 GAATGGCTGC AGTAAGCCAT GCATTATGCC TGGCACTGGG TTTGTGGTAG TGTGTTGTGT TCTCACAATG CCACTGTGAA 004160 004161 ATAAGTCTTA TCTTCACTTT ATGCTGCTGT AAGATAGGAT TTATCCTCAC TTTACAGCCC TGGACACTCA GTTTGAAAGC 004240 004241 AGCTGAGCCA CTTGTCACGG GTCCTGCAGC TAGGAAATGG CAGAGTGTAT TAGTCCATAT TCACACTGCT ATGAAGAACT 004320 004321 GCCTGAGACG GGGTAATTTA TAAAGAAAAT AAGTTTAATT GATTCACAGT TCAGCATGGC TGGGGAGGCC TCAGGAAGCT 004400 004401 TACAATCATG ACATAAGGGG AAGGAGAAAC AAGGCACCTT CTTCACAAGG CGGCAGGAAG GAGAGGTATC GAGTGAAGGG 004480 004481 GGAAGAGCCC CTTATAAAAC CATCAGATCC CATGAGAACT CACTCATTAC CACAAGAACA GCATGAGAGT AACTGCCCCC 004560 004561 ATGATCCAAT TACCTCCCAC CAGGTTCCTT CCATGACAGG TGGGGATTAT GGGGATTATA ATTCAAGATG AGTTTTGGGT 004640 004641 AGGGACACAA AGCCTAACTA TATCACAGAG CTAGGGTTTT AACCCATGTT TGTTTGATTG CTGTGTCTAT ATTCTTCTTC 004720 004721 TCTACCAATA TCATTACCAA ACGTTATTAC TTTATTCTTC TCTATTTCTA AACCCCTGAG GAATATAACA CATTCCTGTC 004800 004801 ATTAAGAGAA GCTGCTGACT TGAAATGGGA GTTCAGTAAT GGCAGTGAGA GGAGATGAAG TAACACCGTT GGAGGAGGTC 004880 004881 AGAGCACAGG GTGCCTTAAA AACAAGCCAC AGCATTTGGA CTTTATTCTC CTTATTTATG CCATCCTGTT TATCAGTATT 004960 004961 GATCTGCAGC ACTCCAAGGT CCAAGGGACA AAGGCAAGGA AATCTCCAAC CTCTCAGAAT ATGAGAAGAT ACTATAGTAA 005040 005041 ATATGTCAAT AAATTTTATT CTACAACAAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT129338_smProtein_4838:5023 |
Length | 62 |
Molecular weight | 6755.8258 |
Aromaticity | 0.0491803278689 |
Instability index | 46.0344262295 |
Isoelectric point | 9.49285888672 |
Runs | 7 |
Runs residual | 0.0380629357452 |
Runs probability | 0.0762989880637 |
Amino acid sequence | MAVRGDEVTPLEEVRAQGALKTSHSIWTLFSLFMPSCLSVLICSTPRSKGQRQGNLQPLR I |
Secondary structure | LLLLLLLLLLHHHHHHHHHHHLLLHHHHHHHHHLLLLLEEEEEELLLLLLLLLLLLLLLL L |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL L |
PiMo | ooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii i |