NONHSAT136617
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT136617 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4774 nt |
Genomic location |
chrX+:35882975..35887748 |
Exon number |
1 |
Exons |
35882975..35887748 |
Genome context |
|
Sequence |
000001 aaacaggata atagacaaat ctccactgaa caacagtttt gaataatata tgtagaGAGT ATCCTGAATG TAGAGACAGT 000080
000081 GTTTGATGTA CACCTCTGCC TGCGCACTGA GAATAGCCAG TTGGCCCTGT GCTGCAATAA GCATGTGGCT GAGTTTCTCA 000160 000161 TGCATGAGAT AAGTTTCTTC CGTGGACTAA ACAATTTAGA CAACTGATGA AGGAAATGCA GATTCACCAT GAAGTCTCAC 000240 000241 AAAATTAGTT CAAAATAATG CTTTCTGTGA TATTGTTATA AAAATGAATA CCAAACAGAT TTATGCAATG AAAATCCTCA 000320 000321 GCAAGTGGAA GACGCTTTAA AAAGCAGAGA ATgggcgggg gtcgtggctc acacctgtaa tcccagcact ttgggaggcc 000400 000401 gaggcaggtg gatcacctga ggtcaggagt tcgagaccag cctggccaac atggtgaaac cccatcttta ctaaaaatac 000480 000481 aaaaattagc caggtgtggt ggtgcacacc tgtaatccca gctactcggg aggctgaggc aggagaatca cttggacctg 000560 000561 ggaggcagag gttgcagtga gctgagatct tgccactgca ctccagcctg ggcaacagag cgagactcca tctcaaacaa 000640 000641 acaaacaaaC ACAGAGAACG CTCATTTCCA AGGAGAACTT GATGTGTTGG TAAATTGTGA TCAACAGTAG ATCACTTCAT 000720 000721 GCTTTTCATC TCAAAAAGGA TTTTTCAAGA TGCTTGAAAT GTTCATGCTT TCAAAATGAA AATCATTTGT ACTTAGTAAT 000800 000801 GCATTACTAT GTGAATGATG ATTTACTGGC CCTGGTTAGT AAATCTGAAG GCAATCTTCT GAATTATTTG GCAAGATTCT 000880 000881 ACATTGAGGA AGTGGTGTTA GCCATCAACT TTACTATGTG CACAGAAACG TTAAACCTGA TAATGTTATT TTGAGTATAA 000960 000961 AAGTTCAggc caggcatggt ggctcacgct tgtaattccg gcactttggg aggccgagga gggcagatca cctgaggtcg 001040 001041 ggagttcaag accagcttga ccaacatgga gaaaccctgt ctctactaaa aatgcaaaat tagctgggca tggtagcaca 001120 001121 tgcctgtaat cccagctatt cgggaggctg aggcaggaga attgcttgaa cctgggaggt ggaggttgca gtgagccaag 001200 001201 atcacaccat tgcactctag cctgggcaaa aagggcaaaa ctccatctca aaaaaaaaaa aTTAGTTCAT ATTTTCCTGG 001280 001281 CTGACCCTTG GTTATGACTG AAGATAAATG ATGAACTGTT TGGTCTCCCA TGGCCATTAA CATACTTAAC TACATAACAC 001360 001361 CTGAGATTCT ATAAGCAATG GAAGATAGCA TGGGAAAATA CAGCCCAGAA TATGACTTTT TTTTTTTCTT GGTGTtgttg 001440 001441 gggctcagaa aactatgccc caaaatgaag gcttcagaag cagcctcaga agagaaagtt tttttctgac cttctcctgc 001520 001521 tctactgtct ttcactcctt ttctccacag aggctagctg tagaaatcag aattcctcta ccccaaggtg gattttagca 001600 001601 atcaaaaccc cttttcccta caaccagcca taaaacctga aaatattact ctaattttcc ctccaccttt ctttgtaaaa 001680 001681 actggccata aattatctga catacattga ctgtaggtcg taagacccgc attccagaga gtgctctgcc ccacacccag 001760 001761 aagaaaagaa tgcatgctca gagaggagaa tctaggcata caggccttgc tgggtttcct cactcagtat tagattatgc 001840 001841 cctttttgtc caaccatatt tttacacaac tgttcatact ttattgaacc taagcataaa aatagatatt ttcccctcta 001920 001921 tctttggttc ttcactgata tggtttggct ctgtgtcccc acccaaatct catcttgtag ctcccgtaat tcccacgtgt 002000 002001 tgtgggaggg gctcagtggg agatgactga attatgaggg cgtgtctttc ctgggctgtt ctcttgatag tgaatgggtc 002080 002081 tcatgagatc ctatggtttt ttttttttct tttttttttt tgagatggag tctcactttg ttgcccaggc tggagtgcag 002160 002161 tggcatgatc tcagctcatt gcaacctctg cctcctaggt tcaagcaatt ctcctgcctc agcctcccaa gtagctggga 002240 002241 ttacaggcac atgccaccat gcctggctaa tttttgtatt tttggtaaag atgggatttc actgtgttgg tcaggctggt 002320 002321 ctcaaactcc tgacctcgtg atccgcccac cttgacctcc caaagtgttg ggattacagg catgagccac catgcatggc 002400 002401 tgagatccta tggttttaaa aatgggaatt gccttgcaaa agctctctct ttgcctgcca ccatccatgt aagatgtgac 002480 002481 ttgctccttc ttgccttcca ccgtgattgt gaggcctttc cagccatgtg ggtccgtaag tccattaaac ctctttcttt 002560 002561 tgtaaattgt ccactctcag gtatgtcttt atcagcagca tgaaaacaga ctaatacatt cactctgaag gctcccgggt 002640 002641 atatacgtta aatatatctg tatgcctttt ctcctattaa tctgtctttt ttgagttaat tttttagcaa aacttcagaa 002720 002721 ggtgaagagg agctttccca ttggcccAAA GTGTCTGTAT GTGTAATTGC TACATGGAGG AACAGTTTTA TACATAATCA 002800 002801 TTAATGAAAA CTGAAGTAAA GATCATGGAC CTAAAAGAAC AATTTCAATT CCCTTATCAC ATCATGGTTG TACCTGTAGA 002880 002881 AGCCAGAGAG ACATTATTCA CAGACTCATC TTCAGAAGAG AGTGTAATCT AGGGCAAAAT GAAATTAAGG ATTTCAAAAG 002960 002961 CATGCATTTT TTGAAGATAC AAATTGAGAA AATATACAAG AGCTATAATC AACTTGTGTT TTGGATGTTA GCAATTCTTC 003040 003041 TAACACACCC CAACTTTGAT ATGTATGATG TGTAAAGAAA TACTGAAATT CTGCCTTCTT TTTCTTTTAC AGTATTTTTC 003120 003121 AATTACATTT ATCATTCATT GGTTTTACAT GCACAATAAA AAAGTGTTTT TTTCCAATTA AGGCTCTCTA AAGAACATGA 003200 003201 TGCAGTCCAA TAAGTACATT AATCACAAAT GAGGATGTGC AGCAGAATTG CAGAATTTAG AGAACAGCTT TTGAATTGAA 003280 003281 GATTATGTAA GAATAATAAG AACCCTAGCA AGATAAACCA GAACTAAGTA GGAAATGACA AGAATGCACA CAGACCTAAT 003360 003361 AGCCCTTTCC TTGTCCATCT TGTATCATAG AGAATTCAAA CCAAGATAAA GAAATTTTAT AAATTAAATG AAGATAAAAT 003440 003441 ATAGATGGAT AAATAAATTA TAGATGAAAT AGTTGATTCA ATGGGTTCAG GGACAGCTTG AGGATACAGC AACATTTTCC 003520 003521 TAAGAACATG GAGATTCCAC ATCTAGACTG AAGAGAATAG AATAGCAGTA CCACACTGTG AGGTCATGTA CTCATTGAGC 003600 003601 TGTGAGAACT CCAGAAGGAC CAAATTTTGC TAATGATGGG TATTTTTTAG TACTTTCACA TTCAGACAGC TGTAAATCCC 003680 003681 AGGCCAAATG ATTCAAAGAT GTCTATCAGT AGCAAAAGCT GGCCCTTCAG GAGTTCTCAC AGCTCATTGA GTGCATGGCA 003760 003761 GAATCCTGTT CCCAAAAGCA GATTTTTGAA AAGCTTAGTG ACAAAGAGGA AGTGATGGAA GTGATTATGC AGGAAACTGA 003840 003841 CTTTATGAAA TGGGAAATCC CCAAGTCTGA GATGTTTAGG AAAGTGCTGG AAGCTCAACT TGAGGATGTC ATTGCTGAGA 003920 003921 CTTCAAAGGA ACATAGACTT GGTGATCACA GACAGAACGT CTCTGAACAA ACAGAATGTT AGCTTCAGGT CTCACAATAA 004000 004001 AGCAAGAAAG CCAGTAACCA GGTGCCACTT TAGAATATCG CAAGATATTT CTAAAACAAA ATAGTAATTT GAAGAGGAAG 004080 004081 TATTACTTTA TAAATAGAAA TGTGTCAGAC ATGAGGCCTC TCGTGTTTTA GAAGCAAAAA AACATGCATA AGAGGAGCTG 004160 004161 CATGTTTCAG AATGCCATTA GCAGCAAGAT ATATTAATGT TTAAGGAGAA ATTATAAAAG TCTAAAGAAG AATGGCATAA 004240 004241 TGAAACAAAA TGTGAGGCAG AAGACATGGT AAAAgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtAG AATAAGGTAT 004320 004321 ATGAAAAAGC AAGAGCAATA AGATGTGAAG AAAATGAGAA AATAACTGGT GAAAATGAAA GATTTGTTCT ATTGTGGATA 004400 004401 AATTAACAGC TCAAAATAGA TAACATGAAA ATGAGTTTAA GGATTTTGCA ACTAAGAGTA GGCTGCCTGC TGGGAAGCTT 004480 004481 AGACTGCAGA AACTACTCAG GAGGTCAGTG ATGAGAAACA TTCCCCCGAG ATAGTTTCAA GTTCTTAATT CTAAAATGAC 004560 004561 CGAGCTCATG ACTCCCAGTT CTAGTTTGAT ATAGACAGTG CTGGGTTCAC TCTGGAAAGA TCATATTCAG AAGTTAGATA 004640 004641 TGGCAATAGT GTTAGAATTA CAATCTGCTC CTGAGATAGG CAACTGGGCC TGACAGCAAG GTTCCAAAAC CTACCGGGTG 004720 004721 AAGAAATGAT GACAAAGGAT TTATGTGTTG GTATGTGATT GTATATTATT TTTG |
Predicted Small Protein
Name | NONHSAT136617_smProtein_1769:2029 |
Length | 87 |
Molecular weight | 9359.6365 |
Aromaticity | 0.116279069767 |
Instability index | 42.9570930233 |
Isoelectric point | 6.95159912109 |
Runs | 13 |
Runs residual | 0.0115411315515 |
Runs probability | 0.0510374628022 |
Amino acid sequence | MHAQRGESRHTGLAGFPHSVLDYALFVQPYFYTTVHTLLNLSIKIDIFPSIFGSSLIWFG SVSPPKSHLVAPVIPTCCGRGSVGDD |
Secondary structure | LLLLLLLLLLLLLLLLLHHHHHHHEEELLEEEEEEEHHHLLLEEEEEELLLLLLEEEEEE EELLLLLEEELLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLL LLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiii iiiiiiiiiiiiiiiiiiiiiiiiii |