NONHSAT139160
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT139160 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1731 nt |
Genomic location |
chrX+:153626729..153629254 |
Exon number |
2 |
Exons |
153626729..153626883,153627679..153629254 |
Genome context |
|
Sequence |
000001 CGGTGTGGTG AGTAAGCGCA GTTGTCGTCT CTTGCGGTGC CGTTGCTGGT TCTCACACCT TTTAGGTCTG TTCTCGTCTT 000080
000081 CCGTTCCGAC TCTCTCTTTT TCGTTGCAGC CACTGAAGAT CCTGGTGTCG CCATGGGCCG CCGCCCCGCC CGTTGTTACC 000160 000161 GGTATTGTAA GAACAAGCCG TACCCAAAGT CTCGCTTCTG CCGAGGTGTC CCTGGTAAGT AGTGGAAGAG CCCCTGCACT 000240 000241 GGTTGGCTCT GCGGACTCCG CGTCCGTCTG TGACACCCCC TGCACACTTA CCCAATCCTT TTAGATGCCA AGATTCGCAT 000320 000321 TTTTGACCTG GGGCGGAAAA AGGCAAAAGT GGATGAGTTT CCGCTTTGTG GCCACATGGT GTCAGATGAA TATGAGCAGC 000400 000401 TGTCCTCTGA AGGTAAGGCA GGATTCTTTG TTCGTCACCC CCCAGTCCTT CCTCCGTGCT CCCTCAACCC CACCCACATA 000480 000481 CACTGCACTG GAATTGGGAG TTGATGAAAC ATGAGCCTTA CAAAACTCAG CCAACACAGT TCCCCTGAGC TGGAGATAGT 000560 000561 CGTGGTGAAT GTTTCTCTAT TATCTTCTCT CACTTTGCTG CTTTTCTTCT CCCTACCTAG CCCTGGAGGC TGCCCGAATT 000640 000641 TGTGCCAATA AGTACATGGT AAAAAGTTGT GGCAAAGATG GCTTCCATAT CCGGGTGCGG CTCCACCCCT TCCACGTCAT 000720 000721 CCGCATCAAC AAGATGTTGT CCTGTGCTGG GGCTGACAGG TGAGCTTGGT CTGGGCCTTT TAAGGCAGTT GGAGTCTCTA 000800 000801 CATTATTAGG CTTGCATTAT TTTATCAGAG CATAGAGGTG GCCCCAGTGA CTCAGCCACT ATGGCTACTA GAAAAGCCAG 000880 000881 GCTGGCAAGT GACTTTCAGT GGTCACTCAG GACCCCTTCC TGCAGATACA AACAAAGCAT GAGTAAGTCT TAGCAAGCTC 000960 000961 TTCCCCACAG GTTAGGGGAA ACACTGGTGA TGGGAGTAGC TCTTCTTGCT TTTAGCTGAA TGACAACCAT CTTGCCAGCA 001040 001041 GGTAGCTGAA GCTGGCAGAG GAGCCCAGTG GCGCCTTTTC AGTGGTTCTT GGGATGCTCC GCAGCCAATT AAGCCGACTG 001120 001121 AGTTCCTTTC CTCATGGGGA CCCAGTGTGC GATGGCTGCA CACAGCAGCT TCCTTGGTAG TGTACGCAGC CTGTTGGTTG 001200 001201 TATGGGTTGC TCTAAGGGAC CTTGGAGACA GGCCTTTCAG GTGGATGTTC ATGTTTCTGA CCTTGCACTA CCCCAATGTA 001280 001281 GGCTCCAAAC AGGCATGCGA GGTGCCTTTG GAAAGCCCCA GGGCACTGTG GCCAGGGTTC ACATTGGCCA AGTTATCATG 001360 001361 TCCATCCGCA CCAAGCTGCA GAACAAGGAG CATGTGATTG AGGCCCTGCG CAGGGCCAAG TTCAAGTTTC CTGGCCGCCA 001440 001441 GAAGGTATGT AGTGCTGCAG CCCCCTTCTC CCACCTTTGC CCCAGGCCTC CTGACTCAGT TCTTTCCATT GCTCCTTAGA 001520 001521 TCCACATCTC AAAGAAGTGG GGCTTCACCA AGTTCAATGC TGATGAATTT GAAGACATGG TGGCTGAAAA GCGGCTCATC 001600 001601 CCAGATGGCT GTGGGGTCAA GTACATCCCC AATCGTGGCC CTCTGGACAA GTGGCGGGCC CTGCACTCAT GAGGGCTTCC 001680 001681 AATGTGCTGC CCCCCTCTTA ATACTCACCA ATAAATTCTA CTTCCTGTCC A |
Predicted Small Protein
Name | NONHSAT139160_smProtein_1133:1396 |
Length | 88 |
Molecular weight | 9675.32 |
Aromaticity | 0.103448275862 |
Instability index | 74.0057471264 |
Isoelectric point | 9.57440185547 |
Runs | 11 |
Runs residual | 0.0118226600985 |
Runs probability | 0.0454706042941 |
Amino acid sequence | MGTQCAMAAHSSFLGSVRSLLVVWVALRDLGDRPFRWMFMFLTLHYPNVGSKQACEVPLE SPRALWPGFTLAKLSCPSAPSCRTRSM |
Secondary structure | LLHHHHHHHHHHHLHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHLLLLLLLLLEEELLLL LLLLLLLLLEEEELLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |