NONHSAT140803
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT140803 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3907 nt |
Genomic location |
chr16+:16968845..16972751 |
Exon number |
1 |
Exons |
16968845..16972751 |
Genome context |
|
Sequence |
000001 TTCATATGTA TACATACGTG TGTGAATGCG TATGTGTGTA TGAAAAGATT ACCACCAACT CAAATGGTAC AGATATGTAT 000080
000081 GAAGAAACTC AAGATAAATA ATAGTAACAT TTTGATTATT GAGTTTCCTT ATAGTTATCT AAATTGTTCA AATTATTTTC 000160 000161 TCAAGCTTCA TGTATTTTCC CACTTTTAAG CAGGCAATAA CAGAAACTAT CTTAAAGATA ACACATTTAA ATTTACTGAC 000240 000241 ACACAGTAGG CACCTAATAA ATAGTTTAAA GAAAATAAGT ATAATTCTCA AAATTCAATA AAGATCTTGT CATTGTGGAG 000320 000321 ACAAAAAGAA CCACGCTTGG AGAGAAGCCA GAGATAGCTG AGAAGATGCT CACTCTGTCT TCTCCTTGAA AGAAAAGCCA 000400 000401 ACACAGATTT AAGAGGTCCA AAAATGATag agaggaagag agagagagag aaagaTTTTC AACCTGCTGC TTTTCAACCA 000480 000481 AAACATTGCA GCAAGGGCTG CAAGCCACAT ACGTGGAATA TACTGAGAAT TTAGCATCTG ATCATGAGCA AACTCAGAGA 000560 000561 CATGGATGGT CCTTCCTGCT ACTTCTTTGA GTTTGCAGGG CTTGGAGGCT GTAGCAGTGA GTGGTGCTGC TGTCCTAATG 000640 000641 TCCTGACTAT ACCGGGAGCC ACTCTTCGAT CATTCTTCTG TCCATTCAGA TGAGTAGAGA TGGGCTGCAT GAacggtttt 000720 000721 atccccagga tcaagtggag catctggcat ggaacagcca gccactcagt aagtgctggg tgaatgcata aatAagtaag 000800 000801 ggaatgagta aatgaagggt tgagtatgtg agtgagtgag tgaatgggtg agACAATGGA TGAATGAATA AATTTGCACC 000880 000881 CCAGAAGAAG CTCTGACACA GCTTTGAATT ACTCCTCCAG ATGCGAGGGG CTTTGTGGAG AGCTGTCCAT CATCCTTGCC 000960 000961 TGCCCAAGGA CAATGACTTC TCAGCTTTCA CCATGCATCC TGCAGCCATG GAGGGAAGCA AAATTAACTG GTCTCCATCA 001040 001041 GCCTCCCcat caaacatttg ctgagcaccc atcatgtgca aaatattgac taggaactgt gggagatggg aagaattctg 001120 001121 gaaactccta actctcaagg aatttgcaGG GTTATCAGAC AGTTGCCACA CAAAGACATA AAAACATCCC CTGCTAAAAT 001200 001201 AAAGACCACG CCAGATATGT GCTGTAGGTA TTCACCCCTG CAGGAACTCT GGGGAAAATG GGGCAGGAGG AGTCACCCTT 001280 001281 GGATGTCACA AATGGCTCTC CAAAGGAAAT AGAACAACAT CGCagcatga attctgaagc cggcccacct gcctgccttg 001360 001361 aattacagct tccaccagct gtctggcctt ggacaaacta cttaactctc cacatctgtc aaatggggat aataatataa 001440 001441 caatccccca atattgtgag gatgaaataa gctaatactt aggaaaagct tggaacagtg cttggcacgt cttaagtgTG 001520 001521 ATATGTGTGA GCTCCTTCCT TGATTCTCAT TCTGACTTGA AGAGGATTTT TAGAGGGGAG ACCCAGGGAA cagtggggca 001600 001601 gcctagacgg gtggaaagtg ttatgctgga ggcttaacct aacctggttc aaaacctggt tctgctattt ctaccagtgt 001680 001681 gaccttgact taaactctcc aaagctcagt tcctcactta taaaatggta ataacaaaac caatttcATT GAAAACGTAT 001760 001761 GCTAACGATG CCATGATAAA TAATAGTTAT TATTAAAGAG AAACACAGTA AAGAAGTTCC CAGAGGGAGG TGAATAAATT 001840 001841 AAGCATGATG ACGTGCCTTG CTACTTCCCC ATCTTTCTCT TCTTCCCCCA GATTTGTTCA AGGTCTCATC ATTACTGGTT 001920 001921 TGCATTTCTA TTTTAATCAT GTTATAGGTT TACAGTATTT TTCCCCCTGC ATCTTTATAT GCTATAATTT GGGTACTATT 002000 002001 TTTACACAAC GAAGCCATTT TTAACCGAGA ACAGATTCAA TTGTCTTTCA GCATATATCA TTGTTTATCT TAATTAATGC 002080 002081 TAAAATATTC TTAGGGGGAA AAACACATCC CACAGAGTAT TATGCGAAGA AACTTAGCAT TCATTTTTGC CTCCCTCTTT 002160 002161 TCTGGCATAT CAATTTATAA AGGTTTTAGC ATCCTGTTAT TTCAATGACA ATAATGCATG CTCTTAAACG CAGACACCCA 002240 002241 TCTGTGGGAA GCAAGTCACA GGGTGTCAAC AGCAGCAAGG TGTGTGTTGC AGTGGAGGTG GAGGATTGAC AGCTGGAAGA 002320 002321 AGAAGGGGAT TTTGCTGGTG AGAATAATGC CAAGTGAAGT CATAGGCTTT GTCTCTGATT GATCCATGGA AACATTCCTT 002400 002401 GAGTAGAGCT GAATCTAGCT AGATTCCATG CTTGGAGTCT TTCTTAGTAA GGCTACTACT ATAAGCACAG ATGATGGAAA 002480 002481 ATGGAtgatg tttttattca tcatccattc tctttccttc aaataagatg ccccatgcac ctctgaggga atgacccttt 002560 002561 acacactcaa cctaagtttt ttgcctctcc ctccagctct agggtgggca tgtgatatag aactgaccaa tcaatatcta 002640 002641 ttatctttct ggccacagtg attgggcaag ggatagccat gtgacccaat cagagccaag agactcagtt ttgaggcttt 002720 002721 agatagaacc actgggaaag agggttctct ttctactggg atgctgacct ggcaggaata ttacccagag ctgcctgtga 002800 002801 ccatctttac tatgaaaagg ggagagcttg ccaaagaatg aagctgtatt atagtctgtt ctcatgctgc taataaagac 002880 002881 atacctgaga tggggtaatt tataaaggaa agaggtttaa tggactcaaa gttccacatg tctggggagg cctcacaatc 002960 002961 atggcagaag gcaaacgagg agcaaagtca cgtcgtacat ggtggaaggc aggagagcgt gtgcagggaa actccccttc 003040 003041 ataaaactat cagatctcgt gagacttacg agaacaacac aggaaagacc cgcccccatg attcatttac ctcccactgg 003120 003121 gtccctccca tgacacatgg gaattaaggg agctacaatt cgagatgaga tttaggtggg gacacagcca aaccatatca 003200 003201 gaagccaata tgaaagaaaa cagaactgag agatggaggc agactcttga tgacaactcc tggaccctgg atcaattttt 003280 003281 gtttaaagcc agtctgcact ctgcatcttt gatgtaaacc aatgtatttc ctttatttgt ttgtttaaac taaattaagt 003360 003361 catttgtaat ttaaagagtt cagaGAGGTG CCGTGTTTCA GTAGGGAACT GTAAAAAGCC AGGATATTCT GTAAATTAGA 003440 003441 AGGGAATAAT GTGGTGTTGA CCACATCTGG GAGAATGTGC ATCTGAGGGT GTCTTGCATG CCAAACTCAC TTGTCTTCCT 003520 003521 AATCAAGCAA TAGTTTGGTA ACTGAGAAGT TCCAAGTAGC CTTTAAGTCA CACAATCATA CTAGAGGAAC TCCTAAGAAC 003600 003601 CTGGGTGACA TTGTGATATA AAATGTGGAA CTTCACTAGG TTATGCAAGA ACCTCTGAAA AGGGTTGATA GGAAGGGTGT 003680 003681 ACGTTAGGTG TGTAAAGAAC TAGGTGTGGG GGAACTAACT AGTACAAAAG GGATCTGGTG AATTTGGATT CTACCCTACT 003760 003761 CGAGATGATG TTGGAGGGCT CTGATCAAAG TAGGGGTTTG GGGGCAGAAT TATGACAAGT ATCTATAGGA AGTCACTATC 003840 003841 TTTTATTAAA AATTTGTTGT GAACCtgtcc tcactcatag ttgggaattg aacaatgaga acacatg |
Predicted Small Protein
Name | NONHSAT140803_smProtein_1844:2023 |
Length | 60 |
Molecular weight | 6741.813 |
Aromaticity | 0.186440677966 |
Instability index | 51.2476271186 |
Isoelectric point | 8.63494873047 |
Runs | 13 |
Runs residual | 0.0758824444099 |
Runs probability | 0.0317421493892 |
Amino acid sequence | MMTCLATSPSFSSSPRFVQGLIITGLHFYFNHVIGLQYFSPCIFICYNLGTIFTQRSHF |
Secondary structure | LEEEEELLLLLLLLHHHHHHHHHHLLEEELLEEEEEEEELLEEEEEELLLLEEEELLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiii |