NONHSAT142752
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT142752 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense,sense |
Length |
1827 nt |
Genomic location |
chr16+:57481337..57488216 |
Exon number |
3 |
Exons |
57481337..57481490,57484952..57485120,57486713..57488216 |
Genome context |
|
Sequence |
000001 AGCGACGACT TCCGCCCTCC TTAGGGCCGT GGTCCCGTAG CTACCGGTCG CGTCGCCGTG GGCGACGTGC CCGCTTCCAA 000080
000081 AATGGCGGCG GCGGCGGTAT CTGGTGCGCT TGGCCGGGCG GGCTGGAGGC TCCTGCAGCT GCGATGCCTG CCCGTGGCCC 000160 000161 GTTGCCGACA AGCCCTGGTG CCGCGTGCCT TCCATGCTTC AGCTGTGGGG CTAAGGTCTT CAGATGAGCA GAAGCAGCAG 000240 000241 CCTCCCAACT CATTTTCTCA GCAGCATTCT GAGACACAGG GGGCAGAAAA ACCTGATCCA GAGTCTTCTC ATTCACCCCC 000320 000321 CAGGTATACA GACCAGGGCG GCGAGGAGGA GGAGGACTAT GAAAGTGAGG AGCAGTTGCA GCACCGCATC CTGACGGCAG 000400 000401 CCCTTGAGTT TGTGCCCGCC CACGGGTGGA CAGCAGAGGC GATTGCAGAA GGAGCCCAGG TGTGTATAGG TGAGGGTGGG 000480 000481 GCCACCTAAC CAAGATGAGC CAGGATGGAG TCACACCAGG CAGAGCGGGG GGCCTCATGC CTTCTTCCAG TCTAGCTCAG 000560 000561 AGCCCCTCAC AGCTGCAAGA TTGACTGGTT TTTTTCCCCC AATAGGGTGG AACTGGCTTT ATTTTGTAGT TATAAAGAAC 000640 000641 Ataccatgga gttggttctt gggagttgtg ttctaaaggc aatctattag gcaagaattg tctgtgatca aaactcccat 000720 000721 gtttcattga ctctaagatg ccattggttg taagaagcat catttttaaa tgcatcagta aaaaagaaaa catactgccc 000800 000801 ttcgaactat gacaaagcac ttctgtgatt cacactgatt ttttaaaatg aaaaatatat ctgcatctta gaattaatga 000880 000881 catatggtgt ttgaaaaccc ccaagaaggc accactttgg agaccaacac atcttatttt cccagaaact ctaatagcat 000960 000961 tttctgcatt agtacagact gctgctttag attaggcagc aggctcatgt tcaggccatg ttgtaGAGAA TCCTCCAGCA 001040 001041 TAGCAAGATA CCATCCTCCA AGAGactgag gggatgacag agttgcatct tccatcccag gcttgctgca gggcatctac 001120 001121 ccatggacaa tgggcaaggt tgctgcttta ctgaaattta actgttattt ccttgtctTC TCTCACTCCC AAGTGCACAT 001200 001201 TTGGTAACAG AAGTCTCATT AGTGAAATGT GGGTGCTCTG ACTCCACTGT AGgctcattg tgaaaactga acaatacaaa 001280 001281 caaatataaa aaagaatgta gaaaacacct ataatcacac caaagatcat actatcaaca tttatgccta gatctttcca 001360 001361 atTAAAACCC TTTATATGat tcattcttta aatgtttatt gagcaaataa tgtgccctag gcactgtgct agtccaagag 001440 001441 acatgacagg ggtcaaagtg gtcaagatgg atctgcttcc tgcccttgtt gagcttccag tctagcaaca ttaataaaat 001520 001521 atatacaaat gtttacttag aagatgtggt aagtgctatc aaggaaaGGT GCTGTTGGGC TGTATAATGG AGGGACCCGA 001600 001601 TCATTAGATC AGGTCACAGC TGCGAGATTG ACTGGTTTTT TTCCCTCAAT AGGGTGGAAA TGGCTTTATT TTGTAGATAT 001680 001681 AAAAGTAATG AACCATGGAA TTGGTTCTTG AGAGTTGTGT TCTAAAGGCA ACCTATTGGC AAGAATTGTC TGTGATCAAA 001760 001761 ACTAccatat ttcattgact ctaagatgcc attggttgta agaagcacca tttttaagta catcagt |
Predicted Small Protein
Name | NONHSAT142752_smProtein_1391:1504 |
Length | 38 |
Molecular weight | 4169.0959 |
Aromaticity | 0.027027027027 |
Instability index | 67.7297297297 |
Isoelectric point | 6.51177978516 |
Runs | 7 |
Runs residual | 0.009422266303 |
Runs probability | 0.0429252782195 |
Amino acid sequence | MFIEQIMCPRHCASPRDMTGVKVVKMDLLPALVELPV |
Secondary structure | LEEEEELLLLLLLLLLLLLLLEEEEELLLHHHHLLLL |
PRMN | - |
PiMo | - |