ENST00000561571.1

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

ENST00000561571.1

Source

Gencode19

Same with

lnc-CT62-1:2,NONHSAT047031

Classification

antisense

Length

554 nt

Genomic location

chr15-:71439989..71481368

Exon number

5

Exons

71439989..71440129,71464491..71464496,71475445..71475555,71477764..71477845,71481155..71481368

Genome context

Sequence
000001 AAAAAAGGAA GGAAGAAAGG AGGAAGAGGC AGGCACAAGA CAAAATGAAT CTCTCCGCTG TGCACATGGA GCCTTAGCTC 000080
000081 TGATTCCAGT TGAGCAAAAT TATGAAGAAG ATGATTCCCC ATATGGATGA CAGATAAACA CCCTGTGGCG AGTCACTCAC 000160
000161 TCCCGAAAGG CCCTCTGAAG GATCGCGCAT GTCCTGACTG CACAGCCTGC TCCTGACAAT GCTCTCAAAG CCACGGTTGT 000240
000241 AATAGAAATT GGAAAATCAA AGCAGATCCA TGTGGCCTCA GCATAACGAA AACAAGATGG GATTTCCCCT CCACAAGCAC 000320
000321 TCTCTTGCCT GCCGCCATGT AAGGCATTCC TTCGCTCCTG CTTTGCCTTC CGCCATGATT GGGAGGCCTC CCCAACCATG 000400
000401 TGGAACTAGA CGGGGTTTCA TCATGTTGCC CAGCCTAGCC TTGAACTCCT CGGCTCAAGT GAACTGCCTG CCTCGGCCTC 000480
000481 CCAAAGTGCT GGGACTACAG TGAGCCACCT TTCTGGCCTA CACAGCACAG CTTTTAAAGA CACAACACGC TTTG
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Predicted Small Protein

Name ENST00000561571.1_smProtein_269:502
Length 78
Molecular weight 8531.0135
Aromaticity 0.0519480519481
Instability index 81.6142857143
Isoelectric point 11.368347168
Runs 8
Runs residual 0.0321852060982
Runs probability 0.0369413531179
Amino acid sequence MWPQHNENKMGFPLHKHSLACRHVRHSFAPALPSAMIGRPPQPCGTRRGFIMLPSLALNS
SAQVNCLPRPPKVLGLQ
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHLLLLLLLLLLLLEEEEEHHHLLLL
LLEELLLLLLLLLLLLL
PRMN -
PiMo -