Difference between revisions of "Lnc-ZCCHC13-1:1"

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[[Category:Intergenic]]
 
[[Category:Intergenic]]
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{{lncrnadb|
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tID = lnc-ZCCHC13-1:1|
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ltID = Jpx|
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ann = <tab class=wikitable sep=tab head=top>
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Section Description
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ID Jpx
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Characteristics Spliced (5 exons), with multiple isoforms. Located at the X-inactivation center (XIC), transcribed from an unmethylated CpG island 10 kb upstream of Xist. Transcribed in antisense orientation to Xist. [http://www.ncbi.nlm.nih.gov/pubmed/12160738 (Johnston (2002))]
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Expression Ubiquitously expressed. Up-regulated during both male and female embryonic stem cell differentiation [http://www.ncbi.nlm.nih.gov/pubmed/21029862 (Tian (2010))].
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Function Involved in the regulation of X chromosome inactivation in mammals via activation of the Xist RNA, possibly by interfering with Tsix expression [http://www.ncbi.nlm.nih.gov/pubmed/21029862 (Tian (2010))]. Jpx seems to act in trans, as its deletion prevents Xist up-regulation also from the Xist allele on the wild type chromosome [http://www.ncbi.nlm.nih.gov/pubmed/21029862 (Tian (2010))].
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Conservation First exon is highly conserved in mouse, human and cow [http://www.ncbi.nlm.nih.gov/pubmed/12045143 (Chureau (2002))].
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</tab>|
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}}

Revision as of 10:57, 6 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-ZCCHC13-1:1

Source

LNCipedia2.1

Same with

,

Classification

intergenic

Length

1696 nt

Genomic location

chrX+:73164158..73290217

Exon number

,

Exons

,

Genome context

Sequence
000001 CTATGCCCTA GGGCTAGTGG AAGACTTAAG ATGGCGGCGT TTGCACGGAG TGCAATCACT GCGTCCTTAC GGGGGTTGCA 000080
000081 AGGCGTCCGA AGTATGAGTC CACTAACAAA AGTCCAGAAA CTCGCCAGTT AATAGTATTG TGTCTCTTCA AAATATCGGA 000160
000161 GAATAATTTC TTTCTCGCTG ATCGCCTAAC TTCTACTGAC GAAGCTTGGA AGTTGCAGAA GATGGAGTTC GCTCTTGTTG 000240
000241 CCCAGGCTGG AATGCAATGG CATGACCTTG GCTCACTGCA ACCTCTGCCT CCCCAGTTCA AGTGGTTCTC CTGCCTCAGC 000320
000321 CTCCCGAGTA GCTGAGATTA CAGAAACCAC AATAAAGGCT CTCGCCCACA TTCTTCCCTC ACCCTCTGCC TCCTGACTGA 000400
000401 CACTGGTGCT TTCCTGGGTG AACCCTGACG GTGTGGCATG CCTCTTCTTG TGATCTATTG TTCACTGTTG GCATATAGAA 000480
000481 ACACTACTGA TGCCTCAGAG ATGACCATGA TGGTGTTCTG GTGTCAGGAG AATAGCAATG CCTGGGAGTC CACCACCACC 000560
000561 ATAATCTCCT GTGATCCCAC GGAGCTGCAG TCAGAAGGGA GCAATGACAA GAAATAAGTG CTGAGCAGTT GTCATATGGT 000640
000641 GCTGGAAGAC ATGCTACTTT TCCCTGAGGG CGGAAGACAG CCTGATGACG GTGGTACAAT CAATGACATC TCTGTGCTGG 000720
000721 GAGTGACCTG CTTGGGGGCC CAGGCTGATC ATTTCACACA GACACCCCTG GATCCTGGAA GCCAAGTCCT GGTCTGGGTA 000800
000801 GACTGGGAGT GGAGGTTTGA CCACATGCAG CAGCATTAAA GGCAGCATCT CATCACAGCA GTTGCTGATT ATCTGTTTGA 000880
000881 GTTAAAGACA ACATCATGGG AGTTAGGGAA ATTTCGGAGT GTGATGCTGG AAAGCCCCTC TGTGAATGCA GAGAAAATAA 000960
000961 CCGCCACTGA AAAGAGTGTC AATAAAAATA TCAGAGATCA GCTGCTCAAC AAAGTATGAG AACTGAGCCT GAATGATCCT 001040
001041 GAGGCGGAGC AGGTGAGAGG CTGGGGCCTG CCAGATGATC ATGCTGGGCC CATTGGAATT GTTACCATCA AGGGTGTTGA 001120
001121 TTCCAACATG TGCTGTGGGA TCCCCATGAG CAATCTCCGT GACTTTCCAG TCATTAAGAT TAGGCACCGA GAAGAGGAAA 001200
001201 AGGAATAAAA TCAAACTGAT ATTTCTGGCT GGGAACCAGA TGCTGAAATG GATGAAGAGA AGTCATGAAA CTGAAAGAGC 001280
001281 ACTGAATCAC TCTGCTTAAG TGTGGAGCAG AGGATCACAT GGAAGCAGTG AAAAAGCTCC AGAATGTAGC CAGGCATGGT 001360
001361 GGCTACTGCC TGTAATCCCA GCACTTTGGG AGGCCGAGGC GGGCAGATCA CGAGGTCAGG AGATCGAGAC CATCCTGGCT 001440
001441 AACACGGTGA AACCCCGTCT CTACTAAAAA TATAAAAAAT TAGCTGGGCG TGTGGCGGGC GCCTGTAGTC CTAGCTACTT 001520
001521 GGGAGGCTGA GGCAGGAGAA TGGCGTGAAC CCAGGAGGTG GAACTTGCAG TGAGCTGAGA TCACGCCACT GCACTCCAGC 001600
001601 CTGGGCGACA GAGCGAGACT CTGTCTCTAA ATAAATAAAT AAATAAATAA ATAAATAAAT AAATAAATAA AAAAAAAAAA 001680
001681 AAAAAAAAAA AAAAAA
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Annotation (From lncRNAdb)

[lnc-ZCCHC13-1:1]
Section Description
ID Jpx
Characteristics Spliced (5 exons), with multiple isoforms. Located at the X-inactivation center (XIC), transcribed from an unmethylated CpG island 10 kb upstream of Xist. Transcribed in antisense orientation to Xist. (Johnston (2002))
Expression Ubiquitously expressed. Up-regulated during both male and female embryonic stem cell differentiation (Tian (2010)).
Function Involved in the regulation of X chromosome inactivation in mammals via activation of the Xist RNA, possibly by interfering with Tsix expression (Tian (2010)). Jpx seems to act in trans, as its deletion prevents Xist up-regulation also from the Xist allele on the wild type chromosome (Tian (2010)).
Conservation First exon is highly conserved in mouse, human and cow (Chureau (2002)).

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