NONHSAT003965
Revision as of 19:29, 16 October 2014 by 124.16.129.48 (talk)
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT003965 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
4893 nt |
Genomic location |
chr1+:75043114..75091782 |
Exon number |
3 |
Exons |
75043114..75043193,75080890..75080980,75087080..75091782 |
Genome context |
|
Sequence |
000001 ACAGTGGCAG TGGTAGCCCA ATGCCAAGGG TTCTGTTATT ATCTGTCCAG CTTATTGGAG GTCACATAAA ATATCAAAAG 000080
000081 TGACACCTCC CCATCCTGAC TTGATGATTT CTTCATGGAG CAGTGGAAAG AACGTAGTCC AGAAATTAGA AGGTTTTGGT 000160 000161 CCATGGCACA GCTGAGCACT GACAACACAT CCTTCCCTGG GCTTATTCCA TCTGAGAGGG AGATGCACAT GTATGATTTC 000240 000241 TTCTACGGTC ATTCTGAAGA TCGGTGTCAT CAATAATTTG GGCTTGGGAC TATCCAGTTT CACAGGGGCA TTCAGTTGAT 000320 000321 TGAAAATCCA ATATCAATAT CGTTTATAGT ATCAAAACAA TCTACCGATC AAAGTCTCTA AAATTACTAC AAAAACCTAT 000400 000401 TTGATATCCT ATGGCATTGC CCAATTTAAA TTATTTATAA AATATGCAGT AAATGTGTAT GCCAGAAAAT CAATGTCCTA 000480 000481 GGCATTGACT CCTAATTAAT TGTTTGAAAT ATTTTCATAA TAGTGAATGA GCACAGTGTT TGCCTGACCT CTACGAGGAA 000560 000561 GAGGAGGAAG TAGAAGCAGA ACAAAGGAAA GGAGGAAGAG GAAGAGAAAT AAGAAAGGCT GAGAGGGTTG AAAGACTTTA 000640 000641 AGGGGGGCTA GTAAGAAAAT TGTAGGCCTC TAGAATTGTA CACAGGCCAG CCTTTCCTTC TCATCTACTT CACTTTCCTA 000720 000721 AAAATCAATT TTAAGCTAGA CAAAAAATGT GCAGAGACCA ACTTTAAGTG GATCCAAGGC AGTAATTTGA GCTGATTCCA 000800 000801 TCAAATTATA GATGCATGAG AAGCATGCAT TTTCTAAAGA ATAACAACGC TGCAACAAAC ATTTTTGAAG GAACTACTAA 000880 000881 AATATTTCCA TCTCTAAACT CATCCTCTTC CACTTCAGAT GATTTCTTTT CCATTTCATT CTATTCTCTG AAGCAAAAAC 000960 000961 CAGAGGAAAG AAATCTGATG GAATGAAATT CTGCTAGCAA CCATCTGAAA GTATAAATGA GGGAGAAAGT CCAAGATTTA 001040 001041 AAAATTCAAG CAAATTTTCT TGCCTGTTGG AAGGAAGAGC TCTCAAATAA AGAGATAATC AAGAGACATA TTACAGGGCA 001120 001121 TCAAGAGCCA TGAAAGTAAA TCAGCAAACT GGATAATTTC TTGCAGATTA GAAACATCTC CCTGAATCAC AGTTGAAGCA 001200 001201 AAGGGGATGA TGCCAGGTCT GACTCCTACT TGGAAAATCA TAATCCCATG TTTCCTCTTG CCTGGGCAAC TGTGGAGCTG 001280 001281 TGACATGCCT GTGTGCAGCC CACTGCACAA TCAGCAGACC TCAGGCAAAT CCAGCTCCAA GCTGCACCTA GCACCTTTAA 001360 001361 TGAAGTGACT GATTAAATAA AAGCATCCCC CTTTTGTTAA GCAATACTTT CTGAAGCAGC ATGGATTTAG AGGCAGCCCT 001440 001441 GTGAGTTTGT AGGCGATAAG CACTATATAA ATACTAGGTA ATAGTGGGAT TAGAGTCAGG GAAAGACCTG TGTCCTGTGT 001520 001521 ATGAAATGAG AAACTGGAAG GAGAAACTTT TAAAGAGAAA AATACAGGAA AAGGCAGCCC TTTATCCTTT TCATTTCCTC 001600 001601 TTATTCATAT TTCTTTCTGC TAAAGCTTAT TTCTGATGGT AAAATCTCTT TTCTCTTGGG TCTCATTATT TCATTCTCTT 001680 001681 TTTAAAAAAT ATTCCCTAAT TATTGCAACC AAGTAAATTT TTTCTAACAA ACAGAAGGCC CAAGTGACAG CTCGTGATTA 001760 001761 AATATACACA CTAGGAAACA AACAGTAGTT TCTTTCAATT GACTGAACTG CCTCTATACT TACCATCTTG CAAAGATATA 001840 001841 ATGACCAGAG ACAAATGAAA CTTTAATAAG GTTTCTCGGC CCTTTCTGCT ATCCTCAAGT AAGTATCAAA ACCTTCCATG 001920 001921 AAAATTCAGT TCCATTTGAA GAACAGGAAC AAGGCCTCAT GCCCCTGCAT AACTAAAGCT CTTCTTTCTG ATTTCCTTCA 002000 002001 CCAGTTGCTT ATGACTTTCC TTCTCATTTC TTTTCAGATT TCTCAGGCAA GTACAACTGA GCTGATAAAG AAACAGCAAG 002080 002081 CCCATTGAGT GGTTAACCCA TCAGTCATTA TATATTTGCA ACATTTAGCA TTGAATTGAT ATACTAAGTT TTCACTGAAA 002160 002161 TCTCTTTTAT CCATGCCCAC ACAAACAGTA TAGTGTCAAA GGGCCTGTTC TTGTTGATAG TGTTGGGCAA TAACTCCTCT 002240 002241 CCATCTTCTT CACGAAGCCC TGGTGAATTC TGGACATCAA GTAGGGTGAC CATGAAATTT ATCATCCAAA CTTGGACACA 002320 002321 TAGTGAAAGA AGTGTTACTA AAAATTAGGA AATGGGGGGG AAAGGGGCAG AATTTTGAAC TATTCCAGGA AAACTGAGAA 002400 002401 GTATGGTCGC CCTACGAATT AGTCTCCCCA CTTCTAGTCT GATATCCCTC AAAATCTCCC TCCTGTTGGA AATCAGAGTG 002480 002481 ATCTATTGTT ATTAAACAGA TCATGTGACT CTCCTGCTTA AAGCCCTCCA GTGATTCCCA TTATCCATGG GATAAGTTCC 002560 002561 AACATTCCCC AGGCAACATA AAATGTGTTA TATTTTCTAA TACCTACTAT CTCCCAGTGA TTGCAATTTC TCATGCTACA 002640 002641 TTTAAATGTC TGGCAACGGA ACTGATTGTA GTGGCCCAAA CACTATCAAC TACTTTTAAT CTCCAGGCCT CTACAACTGT 002720 002721 ATGAGTCACA TGATATTGGA ACTATTCCCT TGTATTATCT CTCTCTCAGT AGATAAGGAT GACGTCCTAG TGATCTTCAT 002800 002801 GCCCCCAGTA ACTTGCCAGT GCTGATGCTT AGTAAGGACC TAATTAACAT TGATCCAACT GGACACAGAC ATGGAACAAT 002880 002881 TAGGCATTCC ATATTCTGTC CTTTCCATAT TCTGATAAAG CTACAGTAGG TTGGTTCTAC CCTATATAGG AAGCTTGCTA 002960 002961 CATTTATAGA AACTCAATAG TTACCAGAAC AGGAAAACTG ATTCACAGTG TCTTGTTAAA CCAAACACCA ATTTTGGTTA 003040 003041 CTATTCCTTG ATAAAGATTG ATACAAAACC AGCCTGACCA TAAAAAGTGG CAATCCCCAT GTTGATGCTG GTGGCCCTAG 003120 003121 AGAGAGAAAG TCTGACACAA GCCAGAGGAA GAGTGTTCAT ATCCCAAAGA CTTAGGAAGC AGCCGGTTGT ATGAAAACCT 003200 003201 CACAGCACTA CATTACACAT GTTCTTCCCT TTCTCTTCTC TTTCTCTCTG GTTTTGCCTC CCAGTTTGCT TTTAGTATAG 003280 003281 TTACTCTTTT CATTTTCTTT TGGGCCATTT TTCTTACTAC TGTGTAAACT TTACCTCATG CTTATTCCTA ATGTGCCCAG 003360 003361 AAACACCTCA ATCCTTACAG AGGCATCAGA GCTCTAGATT TTCAGGATCT CTCTCACCTG TTCCTTCCCA CAGAAATGAT 003440 003441 AATAAGGGTT CCTGCTCACA TTTCCTCCCC CACTCCCTCT GCTTCCTAAC CTACTCTGGT GCTTCCTTGT GTAGCTCTGC 003520 003521 ATGGTGTGGT GTAAGAGTTA TTAACATTAT TGAAGATGGG GTCTTGCTGT GTTGCCTAGG CTGGAGTGCA GTGGTGCAAT 003600 003601 CATAGTGGTG CAATCACTAC AGCCTTAAAC TCCTGGGCCC AAGCCAACCT CCTGCCTCAG CCTCCTTGAT AGCTGGGATT 003680 003681 ACAGGTGTTA GAGATTGGGT CTTGTTATGT TGGCCAGTCT GGTATCAAAC TCCTGACCTC AAGTGATCCT CTTGCCTCAG 003760 003761 CCTTTCAAGT CACTAGGATT ACAGATGTGA GCCACTGCAC CTGATCTTGT GATGGTTAAT TTTACCTATT AATTTAGCCG 003840 003841 GACTCCAATG CCCAGATTGG TAAACATTAT TCTGGATGGA TCCCTGACCA ATGCATGTGG TGTGTCCCCT CCTCTTGGGA 003920 003921 ACTGTGAGTA ACAATCTATC TTTTTGATGG CAATTGTCTC TTAATCTGTA AGTTTCACCA TACCTGAATA ATTTTTAAAA 004000 004001 ACCCACATTT TAAAATAGCC ATGCAGAACA ATATACCTAC TTTCATTAAG AAAGGGCCAA CTAGTGAAGG TTTCAAGCAG 004080 004081 TAGAGGAGCA TGTTGAGAGT TTTTCCATAA AGTTTAATTT AGCACCATTA TGTAGAATCT AATAAAACCG AGATGAATTT 004160 004161 TGCTTATTCC TTTTTCCCCT TTCTGCTTTT CAATCTCAGT TCCCTGGTTC TATCTGCTAA CTTCCTACTG ATCATTCAAA 004240 004241 GCCCATTTCA AATGCCACCT TCTCTAGGAG GCATTCTCTA ATCTCCTCGG TCAAAACTAA TATTTCTTTC CTCTATGTTT 004320 004321 CTATTGTGCT TTATTTATAT CACAATTATA GTACTCATCA CAATATATCA TGGTTAATTG TATATATATA TATCTGTCTC 004400 004401 TCTTGCTAGA CTGCAGTCTT TCTGAGAGAA ACAGTTTAGT CTTACCCATC TTGGTAACCT CAGGACCTAG CATATCATTT 004480 004481 GCCATTATCA ACAAAAACTG GACTGAGCTA TATTCTCATT TAGAGGCAGG ACAAGTATAT AGATGATTGC AATAGTTCCA 004560 004561 TTAAAAGATT AGTTATCAAG CCCCTGAACT AGAGACGTAG CAGTAAGGAT GAAAAAGGAT TATCAGGTAC ATGAGCCACT 004640 004641 GTTCAGGTGG CATCTAGAGC TGTGCCATCC AGGACAGCAG CCACTTCTCC CATTTGGATG CTGGGCATTT GAAAGGTAGC 004720 004721 TCATTTGCTG TAAGTATAAA ATATTCATTG AATATCAAAG ACATAGTATA AGAAAATACA TCATACTTAA TTAAAATTTT 004800 004801 TCATATTGAT TACAGGTGGA AATGATATTT TAGATATACT TGATTAAATA AAATATATTA AAGTCTTAAA ATTTAAAAAA 004880 004881 AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT003965_smProtein_3350:3604 |
Length | 85 |
Molecular weight | 9082.265 |
Aromaticity | 0.0714285714286 |
Instability index | 81.1130952381 |
Isoelectric point | 7.61700439453 |
Runs | 15 |
Runs residual | 0.0445859872611 |
Runs probability | 0.0521462639111 |
Amino acid sequence | MCPETPQSLQRHQSSRFSGSLSPVPSHRNDNKGSCSHFLPHSLCFLTYSGASLCSSAWCG VRVINIIEDGVLLCCLGWSAVVQS |
Secondary structure | LLLLLHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLEEEEEELLLLEEELLLLL EEEEEEELLLEEEEELLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHH HHHHHHHLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTT TTTTTTTooooooooooooooooo |