Difference between revisions of "NONHSAT032274"
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sequence = <dnaseq>aatgatcgaagcagtacaaatcaggggagaacgtgcccaagacctggagaactgataataaattgtggtttatccttgcaatggaacactatatggaagtgaaaatgattgaaatagagctatacacatcatcacagacaaatttcagaaacaacgctgagtgaaaaaTCCACCCACAAATGAATTATCAGGAGTGAACCCAGAGGCACGTATGAATGAAAGTCCACAGACAAACGAATTTAAAGGAACAACCGAGGAGGCACCTGCGAAAGAAAGCCCACACACAAGTGAATTTAAAGGAGCAGCCCTGGTGTCACCTATCAGTAAAAGAATATTTGGAGTTTTCCTGGTCTTACTGGATGTCACTCTCCTCCTTGCCGACCTAATTTTCACTGACAGCAAACTTTATATTCCTTTGGAGTATCGTTCTATTTCTCTAGCTATTGGCTTATTTTTTCTCATGGATGTTCTTCTTCGAGTATTTGTAGAAGGATGGACACATTTAGTTCGACTTCTACGACTTATTATTCTGATAAGAATTTTTCATCTGCTTCATCAAAAAAGACAACTTGAAAAGCTGATGAGAAGGCTGGTTTCAGAAAACAAAAGGCGATACACAAGGGATGGATTTGACCTAGACCTCACTTACGTTACAGAACGTATTATTGCTATGTCATTTCCATCTTCTGGAAGGCAGTCTTTCTATAGAAATCCAATTGAGgaaGAACCGGGACTATGGTTTGTGCCCTCCTTATTGCCTCCGAAATATTTTTAACTGCCGAGGAAAGCCTATATTATTTTGGAGAAAGGCGAACCAATAAAACCCACAGCAATAAATTTCAGGGAGTAGAAACTCCTTCTCAGAATAGATATGTTGGATATTTTGCACAAGTGAAACATCTCTACAACTGGAATCTCCCTCCAAGACGGATACTCTTTATAAAAAGATTCATTATTTATTCGATTCGTGGTGATGTATGTGATCTAAAAGTCCAAGTAGTAATGGAGAAAAAGGTTGTCTTTTCCAGTACTTCATTAGGAAATTGTTCGATATTGCATGACATTGAAACAGACAAAATATTAATTAATGTATATGACGGTCCACCTCTGTATGATGATGTGAAAGTGCAGTTTTTCTCTTCGAATCTTCCTAAATACTATGACAATTGTCCATTTTTCTTCTGGTTCAACACGTCTTTTATTCAAAATAACAGGCTTTGTCTACCAAGAAATGAATTGGATAATCCACATAAACAAAAAGCATGGAAAATTTATCCACCAGAATTTGCTGTGGAGATACTTTTTGGCGAGAAATGACTTCCAATGATGTTGTAGCTGGATCCGACTAAGTATAGCTCCCCCTTCCCCTTCTGGGAAAGAATTATGTTCTTTCCAACCCCTGCCACATGTTCATGTGTCCTAAGTCTTCCTTGATGATGCATCTATATTTATATATGTTTATATATGTTCTTCATAAATCTATTAAATATATATAGATAA</dnaseq>| | sequence = <dnaseq>aatgatcgaagcagtacaaatcaggggagaacgtgcccaagacctggagaactgataataaattgtggtttatccttgcaatggaacactatatggaagtgaaaatgattgaaatagagctatacacatcatcacagacaaatttcagaaacaacgctgagtgaaaaaTCCACCCACAAATGAATTATCAGGAGTGAACCCAGAGGCACGTATGAATGAAAGTCCACAGACAAACGAATTTAAAGGAACAACCGAGGAGGCACCTGCGAAAGAAAGCCCACACACAAGTGAATTTAAAGGAGCAGCCCTGGTGTCACCTATCAGTAAAAGAATATTTGGAGTTTTCCTGGTCTTACTGGATGTCACTCTCCTCCTTGCCGACCTAATTTTCACTGACAGCAAACTTTATATTCCTTTGGAGTATCGTTCTATTTCTCTAGCTATTGGCTTATTTTTTCTCATGGATGTTCTTCTTCGAGTATTTGTAGAAGGATGGACACATTTAGTTCGACTTCTACGACTTATTATTCTGATAAGAATTTTTCATCTGCTTCATCAAAAAAGACAACTTGAAAAGCTGATGAGAAGGCTGGTTTCAGAAAACAAAAGGCGATACACAAGGGATGGATTTGACCTAGACCTCACTTACGTTACAGAACGTATTATTGCTATGTCATTTCCATCTTCTGGAAGGCAGTCTTTCTATAGAAATCCAATTGAGgaaGAACCGGGACTATGGTTTGTGCCCTCCTTATTGCCTCCGAAATATTTTTAACTGCCGAGGAAAGCCTATATTATTTTGGAGAAAGGCGAACCAATAAAACCCACAGCAATAAATTTCAGGGAGTAGAAACTCCTTCTCAGAATAGATATGTTGGATATTTTGCACAAGTGAAACATCTCTACAACTGGAATCTCCCTCCAAGACGGATACTCTTTATAAAAAGATTCATTATTTATTCGATTCGTGGTGATGTATGTGATCTAAAAGTCCAAGTAGTAATGGAGAAAAAGGTTGTCTTTTCCAGTACTTCATTAGGAAATTGTTCGATATTGCATGACATTGAAACAGACAAAATATTAATTAATGTATATGACGGTCCACCTCTGTATGATGATGTGAAAGTGCAGTTTTTCTCTTCGAATCTTCCTAAATACTATGACAATTGTCCATTTTTCTTCTGGTTCAACACGTCTTTTATTCAAAATAACAGGCTTTGTCTACCAAGAAATGAATTGGATAATCCACATAAACAAAAAGCATGGAAAATTTATCCACCAGAATTTGCTGTGGAGATACTTTTTGGCGAGAAATGACTTCCAATGATGTTGTAGCTGGATCCGACTAAGTATAGCTCCCCCTTCCCCTTCTGGGAAAGAATTATGTTCTTTCCAACCCCTGCCACATGTTCATGTGTCCTAAGTCTTCCTTGATGATGCATCTATATTTATATATGTTTATATATGTTCTTCATAAATCTATTAAATATATATAGATAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG012894]] | + | [[Category:Sense]][[Category:NONHSAG012894]][[Category:Transcripts]] |
Latest revision as of 21:17, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT032274 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1500 nt |
Genomic location |
chr13-:19997019..20110903 |
Exon number |
15 |
Exons |
19997019..19997304,19999087..19999157,20000565..20000657,20004608..20004687,20006613..20006718,20010366..20010446,20012232..20012293,20038596..20038660,20039395..20039458,20039605..20039704,20048054..20048215,20066990..20067043,20067588..20067641,20077364..20077417,20110736..20110903 |
Genome context |
|
Sequence |
000001 aatgatcgaa gcagtacaaa tcaggggaga acgtgcccaa gacctggaga actgataata aattgtggtt tatccttgca 000080
000081 atggaacact atatggaagt gaaaatgatt gaaatagagc tatacacatc atcacagaca aatttcagaa acaacgctga 000160 000161 gtgaaaaaTC CACCCACAAA TGAATTATCA GGAGTGAACC CAGAGGCACG TATGAATGAA AGTCCACAGA CAAACGAATT 000240 000241 TAAAGGAACA ACCGAGGAGG CACCTGCGAA AGAAAGCCCA CACACAAGTG AATTTAAAGG AGCAGCCCTG GTGTCACCTA 000320 000321 TCAGTAAAAG AATATTTGGA GTTTTCCTGG TCTTACTGGA TGTCACTCTC CTCCTTGCCG ACCTAATTTT CACTGACAGC 000400 000401 AAACTTTATA TTCCTTTGGA GTATCGTTCT ATTTCTCTAG CTATTGGCTT ATTTTTTCTC ATGGATGTTC TTCTTCGAGT 000480 000481 ATTTGTAGAA GGATGGACAC ATTTAGTTCG ACTTCTACGA CTTATTATTC TGATAAGAAT TTTTCATCTG CTTCATCAAA 000560 000561 AAAGACAACT TGAAAAGCTG ATGAGAAGGC TGGTTTCAGA AAACAAAAGG CGATACACAA GGGATGGATT TGACCTAGAC 000640 000641 CTCACTTACG TTACAGAACG TATTATTGCT ATGTCATTTC CATCTTCTGG AAGGCAGTCT TTCTATAGAA ATCCAATTGA 000720 000721 GgaaGAACCG GGACTATGGT TTGTGCCCTC CTTATTGCCT CCGAAATATT TTTAACTGCC GAGGAAAGCC TATATTATTT 000800 000801 TGGAGAAAGG CGAACCAATA AAACCCACAG CAATAAATTT CAGGGAGTAG AAACTCCTTC TCAGAATAGA TATGTTGGAT 000880 000881 ATTTTGCACA AGTGAAACAT CTCTACAACT GGAATCTCCC TCCAAGACGG ATACTCTTTA TAAAAAGATT CATTATTTAT 000960 000961 TCGATTCGTG GTGATGTATG TGATCTAAAA GTCCAAGTAG TAATGGAGAA AAAGGTTGTC TTTTCCAGTA CTTCATTAGG 001040 001041 AAATTGTTCG ATATTGCATG ACATTGAAAC AGACAAAATA TTAATTAATG TATATGACGG TCCACCTCTG TATGATGATG 001120 001121 TGAAAGTGCA GTTTTTCTCT TCGAATCTTC CTAAATACTA TGACAATTGT CCATTTTTCT TCTGGTTCAA CACGTCTTTT 001200 001201 ATTCAAAATA ACAGGCTTTG TCTACCAAGA AATGAATTGG ATAATCCACA TAAACAAAAA GCATGGAAAA TTTATCCACC 001280 001281 AGAATTTGCT GTGGAGATAC TTTTTGGCGA GAAATGACTT CCAATGATGT TGTAGCTGGA TCCGACTAAG TATAGCTCCC 001360 001361 CCTTCCCCTT CTGGGAAAGA ATTATGTTCT TTCCAACCCC TGCCACATGT TCATGTGTCC TAAGTCTTCC TTGATGATGC 001440 001441 ATCTATATTT ATATATGTTT ATATATGTTC TTCATAAATC TATTAAATAT ATATAGATAA |
Predicted Small Protein
Name | NONHSAT032274_smProtein_215:385 |
Length | 57 |
Molecular weight | 6892.9071 |
Aromaticity | 0.107142857143 |
Instability index | 51.8857142857 |
Isoelectric point | 10.0108032227 |
Runs | 11 |
Runs residual | 0.0431303669009 |
Runs probability | 0.0195596666185 |
Amino acid sequence | MKVHRQTNLKEQPRRHLRKKAHTQVNLKEQPWCHLSVKEYLEFSWSYWMSLSSLPT |
Secondary structure | LLEEELLLLLLLLHHHHHHHHLEEELLLLLLEEELLHHHHHHHHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |