scNanoATAC-seq: Long-read Single-cell ATAC-seq by Oxford Nanopore Technologies Sequencing
| Title | scNanoATAC-seq: Long-read Single-cell ATAC-seq by Oxford Nanopore Technologies Sequencing |
|---|---|
| Description | We present scNanoATAC-seq (Single-cell Assay for Transposase Accessible Chromatin by Oxford Nanopore Technologies Sequencing), an effective method for simultaneous detection of chromatin accessibility and genetic variation. Long fragments of single-cell ATAC-seq library were enriched and sequenced by Oxford Nanopore Technologies platform. Ends of long ATAC-seq fragments are regarded as chromatin accessibility signal in downstream analysis. |
| Organism | Homo sapiens |
| Data Type | Other Type of Genomic Data |
| Data Accessibility | Controlled-access |
| BioProject | PRJCA007999 |
| Release Date | 2022-09-07 |
| Submitter | Fuchou Tang (tangfuchou@pku.edu.cn) |
| Organization | Peking University |
| Submission Date | 2022-07-01 |
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| File ID | File Title | Number/Samples | File Type | File Size | File Suffix | Download Times | Download |
|---|---|---|---|---|---|---|---|
| OMIX001278-01 | Monocyte_peaks | 1 | Other Type of Genomic Data | 1.27 MB | bed | 0 | Controlled |
| OMIX001278-02 | CD4_T_peaks | 1 | Other Type of Genomic Data | 971.43 KB | bed | 0 | Controlled |
| OMIX001278-03 | B_peaks | 1 | Other Type of Genomic Data | 816.21 KB | bed | 0 | Controlled |
| OMIX001278-04 | CD8_T_peaks | 1 | Other Type of Genomic Data | 793.98 KB | bed | 0 | Controlled |
| OMIX001278-05 | CD4_T_coverage | 1 | Other Type of Genomic Data | 72.97 MB | bw | 0 | Controlled |
| OMIX001278-06 | CD8_T_coverage | 1 | Other Type of Genomic Data | 80.75 MB | bw | 0 | Controlled |
| OMIX001278-07 | Monocyte_coverage | 1 | Other Type of Genomic Data | 103.69 MB | bw | 0 | Controlled |
| OMIX001278-08 | B_coverage | 1 | Other Type of Genomic Data | 72.53 MB | bw | 0 | Controlled |
| OMIX001278-09 | B_co-accessibility | 1 | Other Type of Genomic Data | 177.2 KB | bedpe | 0 | Controlled |
| OMIX001278-10 | CD4_T_co-accessibility | 1 | Other Type of Genomic Data | 172.7 KB | bedpe | 0 | Controlled |
| OMIX001278-11 | CD8_T_co-accessibility | 1 | Other Type of Genomic Data | 253.6 KB | bedpe | 0 | Controlled |
| OMIX001278-12 | Monocyte_co-accessibility | 1 | Other Type of Genomic Data | 510.7 KB | bedpe | 0 | Controlled |