| Title | Micro-C-XL mapping of chromatin structure in plants |
|---|---|
| Description | Pol II CTD ChIP-Seq datasets in WT, FVP, and nrpb2-3 |
| Organism | Arabidopsis thaliana |
| Data Type | Genome Binding/Occupancy Profiling |
| Data Accessibility | Open-access |
| BioProject | PRJCA014302 |
| Release Date | 2024-02-02 |
| Submitter | Linhua Sun (Linhua_Sun@pku.edu.cn) |
| Organization | Peking University |
| Submission Date | 2023-09-08 |
HTTP download speed may be slow. It is highly recommended that you download the dataset using a dedicated FTP tool (such as FileZilla Client).
| File ID | File Title | Number/Samples | File Type | File Size | File Suffix | Download |
|---|---|---|---|---|---|---|
| OMIX004875-01 | PolIICTDam_FVP_Input | 1 | Genome Binding/Occupancy Profiling | 51.94 MB | bw | |
| OMIX004875-02 | PolIICTDam_FVP_Rep1 | 1 | Genome Binding/Occupancy Profiling | 51.41 MB | bw | |
| OMIX004875-03 | PolIICTDam_FVP_Rep2 | 1 | Genome Binding/Occupancy Profiling | 52.27 MB | bw | |
| OMIX004875-04 | PolIICTDam_nrpb2-3_Input | 1 | Genome Binding/Occupancy Profiling | 50.97 MB | bw | |
| OMIX004875-05 | PolIICTDam_nrpb2-3_Rep1 | 1 | Genome Binding/Occupancy Profiling | 49.48 MB | bw | |
| OMIX004875-06 | PolIICTDam_nrpb2-3_Rep2 | 1 | Genome Binding/Occupancy Profiling | 49.48 MB | bw | |
| OMIX004875-07 | PolIICTDam_WT-Input | 1 | Genome Binding/Occupancy Profiling | 50.06 MB | bw | |
| OMIX004875-08 | PolIICTDam_WT-Rep1 | 1 | Genome Binding/Occupancy Profiling | 44.3 MB | bw | |
| OMIX004875-09 | PolIICTDam_WT-Rep2 | 1 | Genome Binding/Occupancy Profiling | 46.09 MB | bw |
| Paper Title | Journal Name | Publish Time | Accession | Citing Type |
|---|---|---|---|---|
| Mapping nucleosome-resolution chromatin organization and enhancer-promoter loops in plants using Micro-C-XL | Nature Communications | 2024-01 | OMIX004875 | Deposit |
| Deciphering the 3D genome organization across species from Hi-C data | Nucleic Acids Research | 2026-01 | OMIX004875 | Secondary use |
| ISDH ‐seq: a robust methodology for profiling and characterization of open chromatin | Plant Biotechnology Journal | 2025-04 | OMIX004875 | Secondary use |