Dissection of a Cell Atlas of Developing Somatic Embryos in Cotton by Single-Cell RNA-Sequencing and Spatial Transcriptomic and Metabolomic Analyses: a targeted metabolomics validation
| Title | Dissection of a Cell Atlas of Developing Somatic Embryos in Cotton by Single-Cell RNA-Sequencing and Spatial Transcriptomic and Metabolomic Analyses: a targeted metabolomics validation |
|---|---|
| Description | In the present study, we investigated the spatial and single-cell expression profiles of key genes and the metabolic patterns of key metabolites by integrated single-cell RNA-sequencing (scRNA-seq), spatial transcriptomics (ST), and spatial metabolomics (SM). To evaluate the results of the spatial metabolomics, we performed a multiple reaction monitoring (MRM) targeted metabolomics analysis. |
| Organism | Gossypium hirsutum |
| Data Type | Metabolome Data by Mass Spectrometry (MS) |
| Data Accessibility | Open-access |
| BioProject | PRJCA020126 |
| Release Date | 2023-09-27 |
| Submitter | xuwu sun (sunxuwussd@sina.com) |
| Organization | State Key Laboratory of Cotton Biology, State Key Laboratory of Crop Stress Adaptation and Improvement, Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University |
| Submission Date | 2023-09-26 |
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| File ID | File Title | Number/Samples | File Type | File Size | File Suffix | Download Times | Download |
|---|---|---|---|---|---|---|---|
| OMIX005016-01 | Globular_embryo_1_2_3 | 3 | Metabolome Data by Mass Spectrometry (MS) | 102.29 KB | zip | 0 | |
| OMIX005016-02 | QC_1_2_3_4 | 4 | Metabolome Data by Mass Spectrometry (MS) | 136.18 KB | zip | 0 | |
| OMIX005016-03 | Cotyledonary_embryo_1_2_3 | 3 | Metabolome Data by Mass Spectrometry (MS) | 102.33 KB | zip | 0 | |
| OMIX005016-04 | standards_1_2_3_4_5_6_7_8_9_10_11_12 | 12 | Metabolome Data by Mass Spectrometry (MS) | 373.73 KB | zip | 0 | |
| OMIX005016-05 | Torpedo_embryo_1_2_3 | 3 | Metabolome Data by Mass Spectrometry (MS) | 102.71 KB | zip | 0 |