OMIX005191

1Summary

Title	Single-cell atlas of human cell lines using RNA-seq
Description	Single-cell atlas of human cell lines generated single-cell transcriptome and single-cell chromatin accessibility data of dozens of cancer cell lines and 2 normal cell lines to illustrate both transcriptional and epigenetic heterogeneity within different cell lines. The plasticity of transcriptomic heterogeneity is demonstrated by lineage tracing and hypoxia treatment.
Organism	Homo sapiens
Data Type	Expression Profiling
Data Accessibility	Open-access
BioProject	PRJCA020910
Release Date	2023-11-03
Submitter	liang wu (wliang0712@gmail.com)
Organization	BGI-Shenzhen
Submission Date	2023-11-02

2Files & Download

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File ID	File Title	Number/Samples	File Type	File Size	File Suffix	Download
OMIX005191-01	ZR-75-1_Hypoxia.count_mtx.tsv.txt	1	Expression Profiling	15.49 MB	txt	FTP HTTPs
OMIX005191-02	ZR-75-1.count_mtx.tsv.txt	1	Expression Profiling	13.12 MB	txt	FTP HTTPs
OMIX005191-03	T-47D.count_mtx.tsv.txt	1	Expression Profiling	10.82 MB	txt	FTP HTTPs
OMIX005191-04	SW620_Hypoxia.count_mtx.tsv.txt	1	Expression Profiling	9.11 MB	txt	FTP HTTPs
OMIX005191-05	SW620.count_mtx.tsv.txt	1	Expression Profiling	16.05 MB	txt	FTP HTTPs
OMIX005191-06	SW480.count_mtx.tsv.txt	1	Expression Profiling	45.35 MB	txt	FTP HTTPs
OMIX005191-07	SNB75.count_mtx.tsv.txt	1	Expression Profiling	23.14 MB	txt	FTP HTTPs
OMIX005191-08	SK-BR-3.count_mtx.tsv.txt	1	Expression Profiling	19.27 MB	txt	FTP HTTPs
OMIX005191-09	SF295.count_mtx.tsv.txt	1	Expression Profiling	10.29 MB	txt	FTP HTTPs
OMIX005191-10	SF268.count_mtx.tsv.txt	1	Expression Profiling	17.21 MB	txt	FTP HTTPs
OMIX005191-11	SCC-4_2.count_mtx.tsv.txt	1	Expression Profiling	17.52 MB	txt	FTP HTTPs
OMIX005191-12	SCC-4.count_mtx.tsv.txt	1	Expression Profiling	11.2 MB	txt	FTP HTTPs
OMIX005191-13	RPMI8226.count_mtx.tsv.txt	1	Expression Profiling	32.84 MB	txt	FTP HTTPs
OMIX005191-14	RPE-1.count_mtx.tsv.txt	1	Expression Profiling	35.53 MB	txt	FTP HTTPs
OMIX005191-15	RKO.count_mtx.tsv.txt	1	Expression Profiling	29.77 MB	txt	FTP HTTPs
OMIX005191-16	MDA-MB-468.count_mtx.tsv.txt	1	Expression Profiling	54.71 MB	txt	FTP HTTPs
OMIX005191-17	MDA-MB-453.count_mtx.tsv.txt	1	Expression Profiling	16.67 MB	txt	FTP HTTPs
OMIX005191-18	MDA-MB-361.count_mtx.tsv.txt	1	Expression Profiling	9.67 MB	txt	FTP HTTPs
OMIX005191-19	MDA-MB-231_tracing_T2_SW.txt	1	Expression Profiling	94.62 KB	txt	FTP HTTPs
OMIX005191-20	MDA-MB-231_tracing_T2.count_mtx.tsv.txt	1	Expression Profiling	72.15 MB	txt	FTP HTTPs
OMIX005191-21	MDA-MB-231_tracing_T1_SW.txt	1	Expression Profiling	77.96 KB	txt	FTP HTTPs
OMIX005191-22	MDA-MB-231_tracing_T1.count_mtx.tsv.txt	1	Expression Profiling	92.08 MB	txt	FTP HTTPs
OMIX005191-23	MDA-MB-231_2.count_mtx.tsv.txt	1	Expression Profiling	21.62 MB	txt	FTP HTTPs
OMIX005191-24	MDA-MB-231.count_mtx.tsv.txt	1	Expression Profiling	12.51 MB	txt	FTP HTTPs
OMIX005191-25	MCF7.count_mtx.tsv.txt	1	Expression Profiling	17.77 MB	txt	FTP HTTPs
OMIX005191-26	LS174T.count_mtx.tsv.txt	1	Expression Profiling	32.84 MB	txt	FTP HTTPs
OMIX005191-27	LoVo.count_mtx.tsv.txt	1	Expression Profiling	25.71 MB	txt	FTP HTTPs
OMIX005191-28	K-562.count_mtx.tsv.txt	1	Expression Profiling	30.61 MB	txt	FTP HTTPs
OMIX005191-29	Huh7.count_mtx.tsv.txt	1	Expression Profiling	28.17 MB	txt	FTP HTTPs
OMIX005191-30	HT29.count_mtx.tsv.txt	1	Expression Profiling	28.49 MB	txt	FTP HTTPs
OMIX005191-31	Hs578T.count_mtx.tsv.txt	1	Expression Profiling	32.04 MB	txt	FTP HTTPs
OMIX005191-32	HNSCCUM-03T.count_mtx.tsv.txt	1	Expression Profiling	19.48 MB	txt	FTP HTTPs
OMIX005191-33	HNSCCUM-02T.count_mtx.tsv.txt	1	Expression Profiling	30.89 MB	txt	FTP HTTPs
OMIX005191-34	HK-2.count_mtx.tsv.txt	1	Expression Profiling	7.41 MB	txt	FTP HTTPs
OMIX005191-35	HepG2.count_mtx.tsv.txt	1	Expression Profiling	67.06 MB	txt	FTP HTTPs
OMIX005191-36	HeLa.count_mtx.tsv.txt	1	Expression Profiling	32.34 MB	txt	FTP HTTPs
OMIX005191-37	HCT116_tracing_T2_SW.txt	1	Expression Profiling	182.8 KB	txt	FTP HTTPs
OMIX005191-38	HCT116_tracing_T2.count_mtx.tsv.txt	1	Expression Profiling	65.37 MB	txt	FTP HTTPs
OMIX005191-39	HCT116_tracing_T1_SW.txt	1	Expression Profiling	85.04 KB	txt	FTP HTTPs
OMIX005191-40	HCT116_tracing_T1.count_mtx.tsv.txt	1	Expression Profiling	74.51 MB	txt	FTP HTTPs
OMIX005191-41	HCT116.count_mtx.tsv.txt	1	Expression Profiling	23.52 MB	txt	FTP HTTPs
OMIX005191-42	HCT-8.count_mtx.tsv.txt	1	Expression Profiling	13.52 MB	txt	FTP HTTPs
OMIX005191-43	HCT-15.count_mtx.tsv.txt	1	Expression Profiling	40.55 MB	txt	FTP HTTPs
OMIX005191-44	HCC1937.count_mtx.tsv.txt	1	Expression Profiling	22.6 MB	txt	FTP HTTPs
OMIX005191-45	Hap1.count_mtx.tsv.txt	1	Expression Profiling	13.77 MB	txt	FTP HTTPs
OMIX005191-46	FaDu.count_mtx.tsv.txt	1	Expression Profiling	29.24 MB	txt	FTP HTTPs
OMIX005191-47	DLD-1_Hypoxia.count_mtx.tsv.txt	1	Expression Profiling	24.17 MB	txt	FTP HTTPs
OMIX005191-48	DLD-1.count_mtx.tsv.txt	1	Expression Profiling	11.89 MB	txt	FTP HTTPs
OMIX005191-49	COLO205.count_mtx.tsv.txt	1	Expression Profiling	21.83 MB	txt	FTP HTTPs
OMIX005191-50	Caco-2_2.count_mtx.tsv.txt	1	Expression Profiling	17.96 MB	txt	FTP HTTPs
OMIX005191-51	Caco-2.count_mtx.tsv.txt	1	Expression Profiling	16.79 MB	txt	FTP HTTPs
OMIX005191-52	BT-549.count_mtx.tsv.txt	1	Expression Profiling	13.82 MB	txt	FTP HTTPs
OMIX005191-53	BT-474.count_mtx.tsv.txt	1	Expression Profiling	32.29 MB	txt	FTP HTTPs
OMIX005191-54	A549.count_mtx.tsv.txt	1	Expression Profiling	85.58 MB	txt	FTP HTTPs
OMIX005191-55	A-253.count_mtx.tsv.txt	1	Expression Profiling	11.91 MB	txt	FTP HTTPs
OMIX005191-56	786-O.count_mtx.tsv.txt	1	Expression Profiling	51.14 MB	txt	FTP HTTPs

3Relevant Publications

Paper Title	Journal Name	Publish Time	Accession	Citing Type
Single cell multi-omics reveal intra-cell-line heterogeneity across human cancer cell lines	Nature Communications	2023-12	OMIX005191 OMIX005190	Deposit

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