OMIX005843

1Summary

Title	Early-life ruminal microbiome-derived indole-3-carboxaldehyde and prostaglandin D2 are effective promoters of rumen development
Description	Starchy corn-soybean starter-fed lambs exhibited the thickest ruminal epithelia and fiber-rich alfalfa hay-fed lambs had the thickest rumen muscle. Metabolome and metagenome data revealed that indole-3-carboxaldehyde (IAld) and prostaglandin D2 (PGD2) were the top characteristic ruminal metabolites associated with ruminal epithelial and muscular development, which depended on the enhanced ruminal microbial synthesis potential of IAld and PGD2. Moreover, microbial culture experiment first demonstrated that Bifidobacterium pseudolongum was able to convert tryptophan into IAld and Candida albicans was a key producer for PGD2.
Organism	Ovis aries
Data Type	Metabolome Data by Mass Spectrometry (MS)
Data Accessibility	Open-access
BioProject	PRJCA023620
Release Date	2024-02-19
Submitter	Daming Sun (sundm128@163.com)
Organization	China Pharmaceutical University
Submission Date	2024-02-18

2Files & Download

HTTP download speed may be slow. It is highly recommended that you download the dataset using a dedicated FTP tool (such as FileZilla Client).

File ID	File Title	Number/Samples	File Type	File Size	File Suffix	Download
OMIX005843-01	GC-M8	1	Metabolome Data by Mass Spectrometry (MS)	18.18 MB	CDF	FTP HTTPs
OMIX005843-02	GC-MH1	1	Metabolome Data by Mass Spectrometry (MS)	16.41 MB	CDF	FTP HTTPs
OMIX005843-03	GC-MH2	1	Metabolome Data by Mass Spectrometry (MS)	15.17 MB	CDF	FTP HTTPs
OMIX005843-04	GC-MH3	1	Metabolome Data by Mass Spectrometry (MS)	15.22 MB	CDF	FTP HTTPs
OMIX005843-05	GC-MH4	1	Metabolome Data by Mass Spectrometry (MS)	14.87 MB	CDF	FTP HTTPs
OMIX005843-06	GC-MH5	1	Metabolome Data by Mass Spectrometry (MS)	14.21 MB	CDF	FTP HTTPs
OMIX005843-07	GC-MH6	1	Metabolome Data by Mass Spectrometry (MS)	14.15 MB	CDF	FTP HTTPs
OMIX005843-08	GC-MH7	1	Metabolome Data by Mass Spectrometry (MS)	13.56 MB	CDF	FTP HTTPs
OMIX005843-09	GC-MH8	1	Metabolome Data by Mass Spectrometry (MS)	13.24 MB	CDF	FTP HTTPs
OMIX005843-10	GC-M1	1	Metabolome Data by Mass Spectrometry (MS)	19.05 MB	CDF	FTP HTTPs
OMIX005843-11	GC-MC1	1	Metabolome Data by Mass Spectrometry (MS)	16.36 MB	CDF	FTP HTTPs
OMIX005843-12	GC-MC2	1	Metabolome Data by Mass Spectrometry (MS)	16.02 MB	CDF	FTP HTTPs
OMIX005843-13	GC-MC3	1	Metabolome Data by Mass Spectrometry (MS)	17.23 MB	CDF	FTP HTTPs
OMIX005843-14	GC-MC4	1	Metabolome Data by Mass Spectrometry (MS)	18.19 MB	CDF	FTP HTTPs
OMIX005843-15	GC-MC5	1	Metabolome Data by Mass Spectrometry (MS)	19.17 MB	CDF	FTP HTTPs
OMIX005843-16	GC-MC6	1	Metabolome Data by Mass Spectrometry (MS)	18.46 MB	CDF	FTP HTTPs
OMIX005843-17	GC-MC7	1	Metabolome Data by Mass Spectrometry (MS)	16.11 MB	CDF	FTP HTTPs
OMIX005843-18	GC-MC8	1	Metabolome Data by Mass Spectrometry (MS)	17 MB	CDF	FTP HTTPs
OMIX005843-19	GC-M2	1	Metabolome Data by Mass Spectrometry (MS)	19.09 MB	CDF	FTP HTTPs
OMIX005843-20	GC-MHC1	1	Metabolome Data by Mass Spectrometry (MS)	17.27 MB	CDF	FTP HTTPs
OMIX005843-21	GC-MHC2	1	Metabolome Data by Mass Spectrometry (MS)	16.95 MB	CDF	FTP HTTPs
OMIX005843-22	GC-MHC3	1	Metabolome Data by Mass Spectrometry (MS)	17.82 MB	CDF	FTP HTTPs
OMIX005843-23	GC-MHC4	1	Metabolome Data by Mass Spectrometry (MS)	17.33 MB	CDF	FTP HTTPs
OMIX005843-24	GC-MHC5	1	Metabolome Data by Mass Spectrometry (MS)	15.14 MB	CDF	FTP HTTPs
OMIX005843-25	GC-MHC6	1	Metabolome Data by Mass Spectrometry (MS)	17.09 MB	CDF	FTP HTTPs
OMIX005843-26	GC-MHC7	1	Metabolome Data by Mass Spectrometry (MS)	18.44 MB	CDF	FTP HTTPs
OMIX005843-27	GC-MHC8	1	Metabolome Data by Mass Spectrometry (MS)	18.26 MB	CDF	FTP HTTPs
OMIX005843-28	GC-M3	1	Metabolome Data by Mass Spectrometry (MS)	20.69 MB	CDF	FTP HTTPs
OMIX005843-29	GC-M4	1	Metabolome Data by Mass Spectrometry (MS)	17.6 MB	CDF	FTP HTTPs
OMIX005843-30	GC-M5	1	Metabolome Data by Mass Spectrometry (MS)	17.87 MB	CDF	FTP HTTPs
OMIX005843-31	GC-M6	1	Metabolome Data by Mass Spectrometry (MS)	16.17 MB	CDF	FTP HTTPs
OMIX005843-32	GC-M7	1	Metabolome Data by Mass Spectrometry (MS)	19.07 MB	CDF	FTP HTTPs
OMIX005843-33	NEG-M1	1	Metabolome Data by Mass Spectrometry (MS)	127.44 MB	mzXML	FTP HTTPs
OMIX005843-34	NEG-M2	1	Metabolome Data by Mass Spectrometry (MS)	128.69 MB	mzXML	FTP HTTPs
OMIX005843-35	NEG-M3	1	Metabolome Data by Mass Spectrometry (MS)	128.23 MB	mzXML	FTP HTTPs
OMIX005843-36	NEG-M4	1	Metabolome Data by Mass Spectrometry (MS)	127.47 MB	mzXML	FTP HTTPs
OMIX005843-37	NEG-M5	1	Metabolome Data by Mass Spectrometry (MS)	127.62 MB	mzXML	FTP HTTPs
OMIX005843-38	NEG-M6	1	Metabolome Data by Mass Spectrometry (MS)	127.17 MB	mzXML	FTP HTTPs
OMIX005843-39	NEG-M7	1	Metabolome Data by Mass Spectrometry (MS)	127.93 MB	mzXML	FTP HTTPs
OMIX005843-40	NEG-MC7	1	Metabolome Data by Mass Spectrometry (MS)	126.67 MB	mzXML	FTP HTTPs
OMIX005843-41	NEG-M8	1	Metabolome Data by Mass Spectrometry (MS)	127.61 MB	mzXML	FTP HTTPs
OMIX005843-42	NEG-MC1	1	Metabolome Data by Mass Spectrometry (MS)	126.34 MB	mzXML	FTP HTTPs
OMIX005843-43	NEG-MC2	1	Metabolome Data by Mass Spectrometry (MS)	127.12 MB	mzXML	FTP HTTPs
OMIX005843-44	NEG-MC3	1	Metabolome Data by Mass Spectrometry (MS)	127.48 MB	mzXML	FTP HTTPs
OMIX005843-45	NEG-MC4	1	Metabolome Data by Mass Spectrometry (MS)	126.63 MB	mzXML	FTP HTTPs
OMIX005843-46	NEG-MC5	1	Metabolome Data by Mass Spectrometry (MS)	127.43 MB	mzXML	FTP HTTPs
OMIX005843-47	NEG-MC6	1	Metabolome Data by Mass Spectrometry (MS)	126.29 MB	mzXML	FTP HTTPs
OMIX005843-48	NEG-MC8	1	Metabolome Data by Mass Spectrometry (MS)	127 MB	mzXML	FTP HTTPs
OMIX005843-49	NEG-MH1	1	Metabolome Data by Mass Spectrometry (MS)	127.77 MB	mzXML	FTP HTTPs
OMIX005843-50	NEG-MH2	1	Metabolome Data by Mass Spectrometry (MS)	129.12 MB	mzXML	FTP HTTPs
OMIX005843-51	NEG-MH3	1	Metabolome Data by Mass Spectrometry (MS)	127.54 MB	mzXML	FTP HTTPs
OMIX005843-52	NEG-MH4	1	Metabolome Data by Mass Spectrometry (MS)	127.43 MB	mzXML	FTP HTTPs
OMIX005843-53	NEG-MH5	1	Metabolome Data by Mass Spectrometry (MS)	128.35 MB	mzXML	FTP HTTPs
OMIX005843-54	NEG-MH6	1	Metabolome Data by Mass Spectrometry (MS)	127.64 MB	mzXML	FTP HTTPs
OMIX005843-55	NEG-MH7	1	Metabolome Data by Mass Spectrometry (MS)	127.99 MB	mzXML	FTP HTTPs
OMIX005843-56	NEG-MH8	1	Metabolome Data by Mass Spectrometry (MS)	127.51 MB	mzXML	FTP HTTPs
OMIX005843-57	NEG-MHC1	1	Metabolome Data by Mass Spectrometry (MS)	127.28 MB	mzXML	FTP HTTPs
OMIX005843-58	NEG-MHC2	1	Metabolome Data by Mass Spectrometry (MS)	127.67 MB	mzXML	FTP HTTPs
OMIX005843-59	NEG-MHC3	1	Metabolome Data by Mass Spectrometry (MS)	127.8 MB	mzXML	FTP HTTPs
OMIX005843-60	NEG-MHC4	1	Metabolome Data by Mass Spectrometry (MS)	127.98 MB	mzXML	FTP HTTPs
OMIX005843-61	NEG-MHC5	1	Metabolome Data by Mass Spectrometry (MS)	127.51 MB	mzXML	FTP HTTPs
OMIX005843-62	NEG-MHC6	1	Metabolome Data by Mass Spectrometry (MS)	127.53 MB	mzXML	FTP HTTPs
OMIX005843-63	NEG-MHC7	1	Metabolome Data by Mass Spectrometry (MS)	127.86 MB	mzXML	FTP HTTPs
OMIX005843-64	NEG-MHC8	1	Metabolome Data by Mass Spectrometry (MS)	127.39 MB	mzXML	FTP HTTPs
OMIX005843-65	NEG-QC1	1	Metabolome Data by Mass Spectrometry (MS)	45.55 MB	mzXML	FTP HTTPs
OMIX005843-66	NEG-QC2	1	Metabolome Data by Mass Spectrometry (MS)	46.24 MB	mzXML	FTP HTTPs
OMIX005843-67	NEG-QC3	1	Metabolome Data by Mass Spectrometry (MS)	46.05 MB	mzXML	FTP HTTPs
OMIX005843-68	POS-M1	1	Metabolome Data by Mass Spectrometry (MS)	1.03 GB	mzXML	FTP HTTPs
OMIX005843-69	POS-M2	1	Metabolome Data by Mass Spectrometry (MS)	1.25 GB	mzXML	FTP HTTPs
OMIX005843-70	POS-M3	1	Metabolome Data by Mass Spectrometry (MS)	1.24 GB	mzXML	FTP HTTPs
OMIX005843-71	POS-M4	1	Metabolome Data by Mass Spectrometry (MS)	1.02 GB	mzXML	FTP HTTPs
OMIX005843-72	POS-M5	1	Metabolome Data by Mass Spectrometry (MS)	1.02 GB	mzXML	FTP HTTPs
OMIX005843-73	POS-M6	1	Metabolome Data by Mass Spectrometry (MS)	968.24 MB	mzXML	FTP HTTPs
OMIX005843-74	POS-M7	1	Metabolome Data by Mass Spectrometry (MS)	1.17 GB	mzXML	FTP HTTPs
OMIX005843-75	POS-M8	1	Metabolome Data by Mass Spectrometry (MS)	1.04 GB	mzXML	FTP HTTPs
OMIX005843-76	POS-MC1	1	Metabolome Data by Mass Spectrometry (MS)	1.16 GB	mzXML	FTP HTTPs
OMIX005843-77	POS-MC2	1	Metabolome Data by Mass Spectrometry (MS)	1.17 GB	mzXML	FTP HTTPs
OMIX005843-78	POS-MC3	1	Metabolome Data by Mass Spectrometry (MS)	1.13 GB	mzXML	FTP HTTPs
OMIX005843-79	POS-MC4	1	Metabolome Data by Mass Spectrometry (MS)	1.13 GB	mzXML	FTP HTTPs
OMIX005843-80	POS-MC5	1	Metabolome Data by Mass Spectrometry (MS)	1.15 GB	mzXML	FTP HTTPs
OMIX005843-81	POS-MC6	1	Metabolome Data by Mass Spectrometry (MS)	1.15 GB	mzXML	FTP HTTPs
OMIX005843-82	POS-MC7	1	Metabolome Data by Mass Spectrometry (MS)	1.13 GB	mzXML	FTP HTTPs
OMIX005843-83	POS-MC8	1	Metabolome Data by Mass Spectrometry (MS)	1.14 GB	mzXML	FTP HTTPs
OMIX005843-84	POS-MH1	1	Metabolome Data by Mass Spectrometry (MS)	1.14 GB	mzXML	FTP HTTPs
OMIX005843-85	POS-MH2	1	Metabolome Data by Mass Spectrometry (MS)	1.15 GB	mzXML	FTP HTTPs
OMIX005843-86	POS-MH3	1	Metabolome Data by Mass Spectrometry (MS)	1.17 GB	mzXML	FTP HTTPs
OMIX005843-87	POS-MH4	1	Metabolome Data by Mass Spectrometry (MS)	1.13 GB	mzXML	FTP HTTPs
OMIX005843-88	POS-MH5	1	Metabolome Data by Mass Spectrometry (MS)	1.06 GB	mzXML	FTP HTTPs
OMIX005843-89	POS-MH6	1	Metabolome Data by Mass Spectrometry (MS)	1.15 GB	mzXML	FTP HTTPs
OMIX005843-90	POS-MH7	1	Metabolome Data by Mass Spectrometry (MS)	1.04 GB	mzXML	FTP HTTPs
OMIX005843-91	POS-MH8	1	Metabolome Data by Mass Spectrometry (MS)	1.13 GB	mzXML	FTP HTTPs
OMIX005843-92	POS-MHC1	1	Metabolome Data by Mass Spectrometry (MS)	1.07 GB	mzXML	FTP HTTPs
OMIX005843-93	POS-MHC2	1	Metabolome Data by Mass Spectrometry (MS)	1.19 GB	mzXML	FTP HTTPs
OMIX005843-94	POS-MHC3	1	Metabolome Data by Mass Spectrometry (MS)	1.18 GB	mzXML	FTP HTTPs
OMIX005843-95	POS-MHC4	1	Metabolome Data by Mass Spectrometry (MS)	1.16 GB	mzXML	FTP HTTPs
OMIX005843-96	POS-MHC5	1	Metabolome Data by Mass Spectrometry (MS)	1.11 GB	mzXML	FTP HTTPs
OMIX005843-97	POS-MHC6	1	Metabolome Data by Mass Spectrometry (MS)	1.17 GB	mzXML	FTP HTTPs
OMIX005843-98	POS-MHC7	1	Metabolome Data by Mass Spectrometry (MS)	1.17 GB	mzXML	FTP HTTPs
OMIX005843-99	POS-MHC8	1	Metabolome Data by Mass Spectrometry (MS)	1.15 GB	mzXML	FTP HTTPs
OMIX005843-100	POS-QC1	1	Metabolome Data by Mass Spectrometry (MS)	105.66 MB	mzXML	FTP HTTPs
OMIX005843-101	POS-QC2	1	Metabolome Data by Mass Spectrometry (MS)	104.91 MB	mzXML	FTP HTTPs
OMIX005843-102	POS-QC3	1	Metabolome Data by Mass Spectrometry (MS)	103.59 MB	mzXML	FTP HTTPs
OMIX005843-103	GC-QC1	1	Metabolome Data by Mass Spectrometry (MS)	17.71 MB	CDF	FTP HTTPs
OMIX005843-104	GC-QC2	1	Metabolome Data by Mass Spectrometry (MS)	18.32 MB	CDF	FTP HTTPs
OMIX005843-105	GC-QC3	1	Metabolome Data by Mass Spectrometry (MS)	18.11 MB	CDF	FTP HTTPs
OMIX005843-106	GC-QC4	1	Metabolome Data by Mass Spectrometry (MS)	17.48 MB	CDF	FTP HTTPs

3Relevant Publications

Paper Title	Journal Name	Publish Time	Accession	Citing Type
Adaptive survival strategies of rumen microbiota with solid diet deficiency in early life cause epithelial mitochondrial dysfunction	The Isme Journal	2025-01	OMIX005843	Deposit
Early-life ruminal microbiome-derived indole-3-carboxaldehyde and prostaglandin D2 are effective promoters of rumen development	Genome Biology	2024-03	OMIX005843	Deposit

Registration number
Backup number