| Title | Spatial Transcriptomic Profiling of HCC using Visium and Visium HD Technologies |
|---|---|
| Description | This study employed 10x Genomics' Visium and Visium HD spatial transcriptomic platforms to profile the spatial architecture of the tumor microenvironment in human hepatocellular carcinoma (HCC). The dataset encompasses data generated from a single sample, analyzed at both standard resolution (Visium) and high resolution (Visium HD). This multi-resolution approach allows for the investigation of cellular heterogeneity, cell-cell interactions, and spatially restricted gene expression patterns within the tumor tissue. The data provided here include gene expression matrices, spatial coordinates, and histological images for both platforms. |
| Organism | Homo sapiens |
| Data Type | Expression Profiling |
| Data Accessibility | Controlled-access |
| BioProject | PRJCA047359 |
| Release Date | 2026-01-02 |
| Submitter | Liming Wang (wangbcc259@163.com) |
| Organization | The Second Affiliated Hospital of Dalian Medical University |
| Submission Date | 2025-10-07 |
The data cannot be downloaded as it has not yet been registered in the Human Genetic Resource Management Platform of MOST.
| File ID | File Title | Number/Samples | File Type | File Size | File Suffix | Download |
|---|---|---|---|---|---|---|
| OMIX012156-01 | Visium_HD_Data | 1 | Expression Profiling | 167.21 MB | zip | Unavailable |
| OMIX012156-02 | Visium_Data | 1 | Expression Profiling | 149.98 MB | zip | Unavailable |
| OMIX012156-03 | Visium_Fibroblasts_diff_enrich | 1 | Expression Profiling | 918.8 KB | zip | Unavailable |
| OMIX012156-04 | Code_Info | 1 | Expression Profiling | 18.6 KB | zip | Unavailable |
| OMIX012156-05 | CSVs | 1 | Expression Profiling | 1.1 GB | zip | Unavailable |
| Paper Title | Journal Name | Publish Time | Accession | Citing Type |
|---|---|---|---|---|
| Identification of cancer-associated fibroblasts and analysis of the association of origin with endothelial-to-mesenchymal transition in hepatocellular carcinoma | Scandinavian Journal of Gastroenterology | 2025-11 | OMIX012156 | Deposit |