| Title | scRNA-seq and xenium data of mdCLA |
|---|---|
| Description | Current single-cell atlas of mouse embryos is limited in temporal, cell or sequencing depth coverage. Here, we report mouse developmental Cell and Lineage Atlas (mdCLA), covering whole embryos of 37 timepoints from the 2-cell stage (E1.5) to birth (E19.0) with two million of cells and 4,500 detected genes. The temporal coverage and data quality of mdCLA surpass previous mouse embryonic atlases, enabling the identification of organ-specific cell type and gene expression. |
| Organism | Mus musculus |
| Data Type | Expression Profiling |
| Data Accessibility | Open-access |
| BioProject | PRJCA003138 |
| Release Date | 2026-03-17 |
| Submitter | Jiekai Chen (chen_jiekai@gibh.ac.cn) |
| Organization | Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences |
| Submission Date | 2026-01-26 |
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| File ID | File Title | Number/Samples | File Type | File Size | File Suffix | Download |
|---|---|---|---|---|---|---|
| OMIX014646-01 | All cell annotation | 1 | Expression Profiling | 1.13 GB | csv | |
| OMIX014646-02 | E1.5 count data | 1 | Expression Profiling | 10.59 MB | 5.h5ad | |
| OMIX014646-03 | E10.0 count data | 1 | Expression Profiling | 1.8 GB | 0.h5ad | |
| OMIX014646-04 | E10.5 count data | 1 | Expression Profiling | 1.14 GB | 5.h5ad | |
| OMIX014646-05 | E11.0 count data | 1 | Expression Profiling | 3.1 GB | 0.h5ad | |
| OMIX014646-06 | E11.5 count data | 1 | Expression Profiling | 2.54 GB | 5.h5ad | |
| OMIX014646-07 | E12.0 count data | 1 | Expression Profiling | 3.59 GB | 0.h5ad | |
| OMIX014646-08 | E12.5 count data | 1 | Expression Profiling | 3.89 GB | 5.h5ad | |
| OMIX014646-09 | E13.0 count data | 1 | Expression Profiling | 3.92 GB | 0.h5ad | |
| OMIX014646-10 | E13.5 count data | 1 | Expression Profiling | 2.82 GB | 5.h5ad | |
| OMIX014646-11 | E14.0 count data | 1 | Expression Profiling | 3.3 GB | 0.h5ad | |
| OMIX014646-12 | E14.5 count data | 1 | Expression Profiling | 2.78 GB | 5.h5ad | |
| OMIX014646-13 | E15.0 count data | 1 | Expression Profiling | 3.5 GB | 0.h5ad | |
| OMIX014646-14 | E15.5 count data | 1 | Expression Profiling | 2.8 GB | 5.h5ad | |
| OMIX014646-15 | E16.0 count data | 1 | Expression Profiling | 1.79 GB | 0.h5ad | |
| OMIX014646-16 | E16.5 count data | 1 | Expression Profiling | 5.68 GB | 5.h5ad | |
| OMIX014646-17 | E17.0 count data | 1 | Expression Profiling | 3.67 GB | 0.h5ad | |
| OMIX014646-18 | E17.5 count data | 1 | Expression Profiling | 3.33 GB | 5.h5ad | |
| OMIX014646-19 | E18.0 count data | 1 | Expression Profiling | 3.85 GB | 0.h5ad | |
| OMIX014646-20 | E18.5 count data | 1 | Expression Profiling | 3.55 GB | 5.h5ad | |
| OMIX014646-21 | E19.0 count data | 1 | Expression Profiling | 11.87 GB | 0.h5ad | |
| OMIX014646-22 | E2.0 count data | 1 | Expression Profiling | 19.9 MB | 0.h5ad | |
| OMIX014646-23 | E2.5 count data | 1 | Expression Profiling | 14.06 MB | 5.h5ad | |
| OMIX014646-24 | E3.0 count data | 1 | Expression Profiling | 18.96 MB | 0.h5ad | |
| OMIX014646-25 | E3.5 count data | 1 | Expression Profiling | 21.58 MB | 5.h5ad | |
| OMIX014646-26 | E4.0 count data | 1 | Expression Profiling | 24.77 MB | 0.h5ad | |
| OMIX014646-27 | E4.5 count data | 1 | Expression Profiling | 19.57 MB | 5.h5ad | |
| OMIX014646-28 | E5.0 count data | 1 | Expression Profiling | 49.3 MB | 0.h5ad | |
| OMIX014646-29 | E5.5 count data | 1 | Expression Profiling | 59.75 MB | 5.h5ad | |
| OMIX014646-30 | E6.0 count data | 1 | Expression Profiling | 345.08 MB | 0.h5ad | |
| OMIX014646-31 | E6.5 count data | 1 | Expression Profiling | 365.35 MB | 5.h5ad | |
| OMIX014646-32 | E7.0 count data | 1 | Expression Profiling | 840.49 MB | 0.h5ad | |
| OMIX014646-33 | E7.5 count data | 1 | Expression Profiling | 596.94 MB | 5.h5ad | |
| OMIX014646-34 | E7.75 count data | 1 | Expression Profiling | 178.36 MB | 75.h5ad | |
| OMIX014646-35 | E8.0 count data | 1 | Expression Profiling | 1.47 GB | 0.h5ad | |
| OMIX014646-36 | E8.5 count data | 1 | Expression Profiling | 2.36 GB | 5.h5ad | |
| OMIX014646-37 | E9.0 count data | 1 | Expression Profiling | 1.74 GB | 0.h5ad | |
| OMIX014646-38 | E9.5 count data | 1 | Expression Profiling | 1.34 GB | 5.h5ad | |
| OMIX014646-39 | scRNA count of WT and cKO pituitary | 2 | Expression Profiling | 587.08 MB | h5ad | |
| OMIX014646-40 | xenium data of E14.5 kidney | 1 | Expression Profiling | 59.82 MB | 5_kidney_rawdata.h5ad | |
| OMIX014646-41 | xenium data of E18.0 kidney | 1 | Expression Profiling | 124.35 MB | 0_kidney_rawdata.h5ad |
| Paper Title | Journal Name | Publish Time | Accession | Citing Type |
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