Shuhui Song

Professor

Team Leader, Variation Resources

Email: songshh (AT) big.ac.cn

Tel: +86 (10) 8409-7620

Chinese Name: 宋述慧  [Google Scholar, h-index=38, as of Dec. 2024;  ORCID: 0000-0003-2409-8770] 

PROFESSIONAL EXPERIENCE

• Head of Department of Bioinformatics Service , China National Center for Bioinformation, China, 2024 - Present

• Associate Director of National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences / China National Center for Bioinformation, China, 2023 - Present

• Professor, Beijing Institute of Genomics, Chinese Academy of Sciences (CAS), China, 2022−Present
  

• Associate Professor, Beijing Institute of Genomics, Chinese Academy of Sciences (CAS), China, 2010−2021

• Assistant Professor, Beijing Institute of Genomics, Chinese Academy of Sciences (CAS), China, 2008−2010

EDUCATION

• PhD in Genetics, Beijing Institute of Genomics, Chinese Academy of Sciences (CAS), China, 2008

• BS in Biology Science, Shanxi Normal University, China, 2003

RESEARCH INTERESTS

• Genomic Variation and Knowledge Data Integration and Analytics

• Cancer Bioinformatics

• RNA-Omics and Bioinformatics

RESOURCES and TOOLs

• GVM：Genome Variation Map (基因组序列变异数据库)http://ngdc.cncb.ac.cn/gvm/

• GWAS Atlas（基因组变异关联知识库）https://ngdc.cncb.ac.cn/gwas/

• OPIA（植物图像数据库）https://ngdc.cncb.ac.cn/opia/

• SR4R （水稻不同应用变异数据集及在线分析）http://sr4r.ic4r.org/

• SoyOmics（大豆多模态数据整合应用平台）https://ngdc.cncb.ac.cn/soyomics

• MaizeOmics （玉米多模态数据整合应用平台）https://ngdc.cncb.ac.cn/maizeomics/

• SugacaneOmics （甘蔗多模态数据整合应用平台）https://ngdc.cncb.ac.cn/scod/

• HalOmics （田菁多模态数据整合应用平台）https://ngdc.cncb.ac.cn/halomics/  

• CGIR（叶绿体基因组信息资源库及应用平台）https://ngdc.cncb.ac.cn/cgir/

• RCoV19（新冠病毒基因组信息库及演化追踪应用平台）https://ngdc.cncb.ac.cn/ncov/

• MPoxVR（猴痘病毒基因组信息库）https://ngdc.cncb.ac.cn/gwh/poxvirus/

• IDP-Hub（免疫力数字解码重大研究计划数据中枢）https://ngdc.cncb.ac.cn/idp/

• EpiCancer（癌症表观知识库）https://ngdc.cncb.ac.cn/epicancer/

FUNDING

• Research and development of massive pathogene genome sequences analysis method and tracking application platform (2021YFF0703703), 480w RMB, 2021.12-2024.11
  

• The Youth Innovation Promotion Association of Chinese Academy of Science (Y2021038), 200w RMB, 2022.1-2024.12

• 2019 novel coronavirus genome and its dynamic monitoring platform for evolution and variation, The Strategic Priority Research Program of the Chinese Academy of Sciences of China (XDA19090116), 50w RMB, 2019.1-2019.12

• Association system of known genetic loci and development of phenotype identification software, The Strategic Priority Research Program of the Chinese Academy of Sciences of China (XDA24040201), 146w RMB, 2019.11-2024.12

• The Youth Innovation Promotion Association of Chinese Academy of Science (2017141), 80w RMB, 2017.1-2020.12

• Gene library establishment and rapid detection system of Cistanche deserticola based on high-throughput transcriptome sequencing technology, Cooperation project of Chinese Academy of Sciences, 50w RMB, 2013.6-2015.6

• Epigenetic regulation Study of 5-hydroxymethylcytosine in rice, National Natural Science Foundation of China (31271372), 80w RMB, 2013.1-2016.12 

• Epigenetic regulation Study of 5-hydroxymethylcytosine in rice, Beijing Nova Program (Z121105002512060),  28w RMB, 2012.12-2015.127

• Construction and comparative analysis of gene regulatory networks based on heterosis potential related gene databases, National Natural Science Foundation of China, Young Scholar’s Program (30900831), 20w RMB, 2010.1-2012.12

• Molecular module dictionary, Strategic Priority Research Program of the Chinese Academy of Sciences (XDA08020102), 250w, 2016.1-2018.12

ACADEMIC ACTIVITIES（Recent 3 years）

• 新冠病毒基因组信息资源整合与序列变异分析，中国科学院青年创新促进会2020年学术年会（分会报告），武汉，27 Oct，2020

• 新冠病毒基因组信息资源整合与序列变异比较分析，第九届全国生物信息学与系统生物学学术大会（分会邀请报告），上海，26 Sep，2020

• 资源物种基因组变异整合及知识挖掘应用，第二届青年生命科学论坛（分会报告），武汉，24 Sep，2020

• The global landscape of SARS-CoV-2 genomes, variants, and haplotypes in 2019nCoVR, International Forum of Biodiversity, Biomedicine, Biotechnology, Biosecurity (4BIO)（分会邀请报告），温州，11 Sep，2020

• 新型冠状病毒信息库及变异动态演化监测追踪，生物安全与生物多样性科学研究主题沙龙，青岛，16 Aug， 2020

• Building the national genomics data center，ANSO“一带一路”国际青年科学家科技发展论坛（分论坛报告），杭州，11 Sep，2019

• 生命与健康大数据系统建设及挖掘应用，中国科学院青年创新促进会2019年学术年会（分会报告），沈阳，16 Oct，2019

• 生命与健康大数据系统，大科学装置交叉学科论坛（大会报告），稻城，23 Sep，2019

• 生命组学大数据管理与资源体系建设，第二届IGDB前沿生物技术学术会议（大会报告），北京，23 Aug，2019

• 基因组序列及知识库系统，第一届青年生命科学论坛（分会报告），新疆，12 Jul，2019

• Improving Rice Genome Annotation Based on Public RNA-seq and the updated IC4R2.0，PAG Asia（分会报告），深圳，6 Jun，2019

• The 11th International Biocuration Conference，The 11th International Biocuration Conference（分会报告），上海，8 April，2018

• 面向精准医学的组学大数据，第一届青促会北京地区生命科学交叉论坛（大会报告）,北京, Jul, 07, 2018

• Genome variation map: a repository of genome variations for global animals and plants, 第五届全国计算生物学与生物信息学学术会议（分会报告）,唐山, Apr. 21, 2018

RECENT PUBLICATIONS 

2025年度

1.      Bai Xue#; Xie Haixia#; Luo Hong#; Ren Siwei#; Tang Bixia; Li Cuiping; Wang Yi; Xu Bo; Wu Zishan; Tian D^#; Song Shuhui^#; Genome Variation Map: a platform for the analysis and integration of genomic variation. Nucleic Acids Res 2026, 54(D1):D1208-D1215.

2.      Luo Hong#; Bai Xue#; Wu Zishan#; Ren Siwei; Xie Haixia; Yuan Zhixiang; Zhang Jie; Tian Dongmei^#; Song Shuhui^#; SugarcaneOmics: An integrative multi-omics platform for sugarcane research. Plant Commun 2025, 6(11):101489.

3.       Yongrong Cao#; Hong Luo; Rongye Ye; Lun Li; Zishan Wu; Dongmei Tian*; Shuhui Song*; Img2Variety: Image-Based Intraspecific Varieties Identification Across the Whole Growth Period, Plant Phenomics, 2026.

4.       Xu Bo#; Li Lun#; Li Cuiping; Wang Anke; Fan Zhuojing; Song Shuhui*; HaploThread: A Scalable Desktop Tool for Efficient Haplotype Network Inference and Interactive Visualization, Mol Bio Evo, 2026

5.       Zhao Fu#; Teng Xufei#; Zhang Jing#; Li Shiwei#; Wang Leiming; Zhao Hanguang; Zhang Shun; Zhao Chi; Li Peng; Zhao Xiaobin; Song Shuhui*; Liu Pinan*; Multiplatform molecular analyses reveal two molecular subgroups of NF2-related schwannomatosis vestibular schwannomas with distinct tumour microenvironment and therapeutic vulnerabilities. Acta Neuropathol 2025, 149(1).

2024年度

1.       Lun Li#; Cuiping Li#; Na Li#; Dong Zou; Wenming Zhao; Hong Luo; Yongbiao Xue*; Zhang Zhang*; Yiming Bao*; Shuhui Song*; Machine Learning Early Detection of SARS-CoV-2 High-Risk Variants, Advanced Science, 2024, 2405058

2.     CNCB-NGDC Members and Partners; Song Shuhui#; Xue Yongbiao*; Zhang Zhang*; Zhao Wenming*; Xiao Jingfa*; He Shunmin*; Zhang Guoqing*; Li Yixue*; Zhao Guoping*; Chen Runsheng*; Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2024, Nucleic Acids Research, 2024, 52(D1): D18-D32.

3.       Cao Yongrong#; Tian Dongmei#; Tang Zhixin; Liu Xiaonan; Hu Weijuan*; Zhang Zhang*; Song Shuhui*; OPIA: an open archive of plant images and related phenotypic traits, Nucleic Acids Research, 2024, 52(D1): D1530-D1537.

4.        Li Cuiping; Wu Lnhuan; Shu Chang; Bao Yiming*; Ma Juncai*; Song Shuhui*;  Data-driven public health security, Chinese Science Bulleti, 2024.

5.     Tian Dongmei#; Xu Tianyi #; Kang Hailong#; Luo Hong; Wang Yanqing; Chen Meili; Li Rujiao; Ma Lina; Wang Zhonghuang; Hao Lili; Tang Bixia; Zou Dong; Xiao Jingfa; Zhao Wenming; Bao Yiming; Zhang Zhang*; Song Shuhui*; Plant genomic resources at National Genomics Data Center: Assisting in data-driven breeding applications, aBIOTECH, 2024.

6.      Li Hao#; Zhao Wei#; Yang Fei#; Qiao Qin#; Ma Shuai#; Yang Kuan#; Song Shuhui#; Wang Si; Qu Jing*; Liu Guanghui*; Bao Yiming*; Zhang Weiqi*; Immunosenescence Inventory-a multi-omics database for immune aging research. Nucleic Acids Res 2024, 53(D1):D1047-D1054.

2023年度

1.       CNCB-NGDC Members and Partners; Song Shuhui#; Xue Yongbiao^*; Bao Yiming*; Zhang Zhang*; Zhao Wenming*; Xiao Jingfa*; He Shunmin*; Zhang Guoqing*; Li Yixue*; Zhao Guoping*; Chen Runsheng*; Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2023, Nucleic Acids Research, 2023, 51(D1): D18-D28.

2.       Liu Xiaonan#; Tian Dongmei#; Li Cuiping#; Tang Bixia; Wang Zhonghuang; Zhang Rongqin; Pan Yitong; Wang Yi; Zou Dong; Zhang Zhang*; Song Shuhui*; GWAS Atlas: an updated knowledgebase integrating more curated associations in plants and animals, Nucleic Acids Research, 2023, 51(D1): D969-D976.

3.       Liu Yucheng#; Zhang Yang#; Liu Xiaonan#; Shen Yanting#; Tian Dongmei; Yang Xiaoyue; Liu Shulin; Ni Lingbin; Zhang Zhang*; Song Shuhui*; Tian Zhixi*; SoyOmics: A deeply integrated database on soybean multi-omics, Molecular Plant 2023, 16(5): 794-797.

4.     Li Lun#; Xu Bo#; Tian Dongmei#; Wang Anke#; Zhu Junwei#; Li Cuiping; Li Na; Zhao Wei; Shi Leisheng; Xue Yongbiao*; Zhang Zhang*; Bao Yiming*; Zhao Wenming*; Song Shuhui*; McAN: a novel computational algorithm and platform for constructing and visualizing haplotype networks, Briefings in Bioinformatics, 2023, 24(3): bbad174.

5.        Hua Zhongyi#; Jiang Chao#; Song Shuhui#; Tian Dongmei; Chen Ziyuan; Jin Yan; Zhao Yuyang; Zhou Junhui; Zhang Zhang*; Huang Luqi*; Yuan Yuan*; Accurate identification of taxon-specific molecular markers in plants based on DNA signature sequence, Molecular Ecology Resources, 2023, 23(1): 106-117.

6.       Li Cuiping#; Ma Lina#; Zou Dong#; Zhang Rongqin#; Bai Xue; Li Lun; Wu Gangao; Huang Tianhao; Zhao Wei; Jin Enhui; Bao Yiming*; Song Shuhui*; RCoV19: A One-stop Hub for SARS-CoV-2 Genome Data Integration, Variant Monitoring, and Risk Pre-warning, Genomics, Proteomics & Bioinformatics, 2023, 21(5): 1066-1079.

2022年度

1.      Zhang Zhiwei#; Teng Xufei#; Zhao Fu#; Ma Chunhui#; Zhang Jing; Xiao Lingfeng; Wang Yaning; Chang Mengqi; Tian Yongji; Li Chunde; Zhang Zhang; Song Shuhui*; Tong Weimin*; Liu Pinan*; Niu Yamei*; METTL3 regulates m6A methylation of PTCH1 and GLI2 in Sonic hedgehog signaling to promote tumor progression in SHH-medulloblastoma, Cell Reports, 2022, 41(4): 111530.

2.       CNCB-NGDC Members and Partners; Song Shuhui#; Xue Yongbiao^*; Bao Yiming^*; Zhang Zhang*; Zhao Wenming*; Xiao Jingfa*; He Shunmin*; Zhang Guoqing*; Li Yixue*; Zhao Guoping*; Chen Runsheng*; Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022, Nucleic Acids Research, 2022, 50(D1): D27-D38.

3.         Ma Yingke#; Chen Meili#; Bao Yiming*; Song Shuhui*; MPoxVR: A comprehensive genomic resource for monkeypox virus variant surveillance, The Innovation, 2022, 3(5): 100296.

4.         Hua Zhongyi#; Tian Dongmei#; Jiang Chao#; Song Shuhui#; Chen Ziyuan; Zhao Yuyang; Jin Yan; Huang Luqi*; Zhang Zhang*; Yuan Yuan*; Towards comprehensive integration and curation of chloroplast genomes, Plant Biotechnology Journal, 2022, 20(12): 2239-2241.

2021年度

1.       Wu Chung-I.*; Wen Haijun; Lu Jian; Su Xiao-dong; Hughes Alice C.; Zhai Weiwei; Chen Chen; Chen Hua; Li Mingkun; Song Shuhui; Qian Zhaohui; Wang Qihui; Chen Bingjie; Guo Zixiao; Ruan Yongsen; Lu Xuemei; Wei Fuwen; Jin Li; Kang Le; Xue Yongbiao; Zhao Guoping; Zhang Yaping; On the origin of SARS-CoV-2—The blind watchmaker argument, Science China Life Sciences, 2021, 64(9): 1560-1563.

2.       CNCB-NGDC Members and Partners; Song Shuhui#; Bao Yiming*; Zhang Zhang*; Zhao Wenming*; Xiao Jingfa*; He Shunmin*; Zhang Guoqing *; Li Yixue*;  Zhao Guoping *; Chen Runsheng*；Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021, Nucleic Acids Research, 2021, 49(D1): D18-D28.

3.       Song Shuhui#; Li Cuiping#; Kang Lu#; Tian Dongmei#; Badar Nazish#; Ma Wentai; Zhao Shilei; Jiang Xuan; Wang Chun; Sun Yongqiao; Li Wenjie; Lei Meng; Li Shuangli; Qi Qiuhui; Ikram Aamer; Salman Muhammad; Umair Massab; Shireen Huma; Batool Fatima; Zhang Bing; Chen Hua; Yang Yungui; Abbasi Amir Ali*; Li Mingkun*; Xue Yongbiao*; Bao Yiming*; Genomic Epidemiology of SARS-CoV-2 in Pakistan, Genomics, Proteomics & Bioinformatics, 2021, 19(5): 727-740.

4.       Liu Xiaonan#; Wang Pei#; Teng Xufei#; Zhang Zhang*; Song Shuhui*; Comprehensive Analysis of Expression Regulation for RNA m6A Regulators With Clinical Significance in Human Cancers, Frontiers in Oncology, 2021, 11: 624395.

5.       Li Cuiping#; Tian Dongmei#; Tang Bixia#; Liu Xiaonan#; Teng Xufei#; Zhao Wenming; Zhang Zhang*; Song Shuhui*; Genome Variation Map: a worldwide collection of genome variations across multiple species, Nucleic Acids Research,  2021, 49(D1): D1186-D1191.

6.       Di Ran#; Liu Qiuyue#; Song Shuhui#; Tian Dongmei#; He Jianning; Ge Ying; Wang Xiangyu; Hu Wenping; Mwacharo Joram-Mwashigadi; Pan Zhangyuan; Wang Jiandong; Ma Qing; Cao Guiling; Jin Huihui; Liang Xiaojun*; Chu Mingxing*; Expression characteristics of pineal miRNAs at ovine different reproductive stages and the identification of miRNAs targeting the AANAT gene, BMC Genomics, 2021, 22(1): 217.

2020年度

1.       Zhao Wenming#; Song Shuhui#; Chen Meili#; Zou Dong#; Ma Lina#; Ma Yingke; Li Rujiao; Hao Lili; Li Cuiping; Tian Dongmei; Tang Bixia; Wang Yanqing; Zhu Junwei; Chen Huanxin; Zhang Zhang; Xue Yongbiao*; Bao Yiming*; The 2019 novel coronavirus resource, Yi Chuan, 2020, 42(2): 212-221.

2.       Zhang Zhang#*; Song Shuhui; Yu Jun; Zhao Wenming; Xiao Jingfa; Bao Yiming; The Elements of Data Sharing, Genomics, Proteomics & Bioinformatics, 2020, 18(1): 1-4.

3.       Yan Jun#; Zou Dong#; Li Chen; Zhang Zhang; Song Shuhui*; Wang Xiangfeng*; SR4R: An Integrative SNP Resource for Genomic Breeding and Population Research in Rice, Genomics, Proteomics & Bioinformatics 2020, 18(2):173-185.

4.       Tian Dongmei#; Wang Pei#; Tang Bixia#; Teng Xufei; Li Cuiping; Liu Xiaonan; Zou Dong; Song Shuhui*; Zhang Zhang*; GWAS Atlas: a curated resource of genome-wide variant-trait associations in plants and animals, Nucleic Acids Research, 2020, 48(D1): D927-D932.

5.       National Genomics Data Center Members and Partners; Song Shuhui#; Zhang Zhang*; Zhao Wenming*; Xiao Jingfa*; Bao Yiming*; He Shunmin*; Zhang Guoqing *; Li Yixue*; Zhao Guoping *; Chen Runsheng*; Database Resources of the National Genomics Data Center in 2020, Nucleic Acids Research, 2020, 48(D1): D24-D33.

6.       Song Shuhui#; Ma Lina#; Zou Dong#; Tian Dongmei#; Li Cuiping#; Zhu Junwei#; Chen Meili; Wang Anke; Ma Yingke; Li Mengwei; Teng Xufei; Cui Ying; Duan Guangya; Zhang Mochen; Jin Tong; Shi Chengmin; Du Zhenglin; Zhang Yadong; Liu Chuandong; Li Rujiao; Zeng Jingyao; Hao Lili; Jiang Shuai; Chen Hua; Han Dali; Xiao Jingfa; Zhang Zhang*; Zhao Wenming*; Xue Yongbiao*; Bao Yiming*; The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR, Genomics, Proteomics & Bioinformatics, 2020, 18(6): 749-759.

7.       Liu Shengxue#; Li Cuiping#; Wang Hongwei; Wang Shuhui; Yang Shiping; Liu Xiaohu; Yan Jianbing; Li Bailin; Beatty Mary; Zastrow-Hayes Gina; Song Shuhui*; Qin Feng*; Mapping regulatory variants controlling gene expression in drought response and tolerance in maize, Genome Biology, 2020, 21(1): 163.

8.       Liu Qi#; Zhao Shilei#; Shi Cheng-Min#; Song Shuhui#; Zhu Sihui; Su Yankai; Zhao Wenming; Li Mingkun; Bao Yiming; Xue Yongbiao*; Chen Hua*; Population Genetics of SARS-CoV-2: Disentangling Effects of Sampling Bias and Infection Clusters, Genomics, Proteomics & Bioinformatics, 2020, 18(6): 640-647.

9.       Liu Lin#; Wang Guangyu#; Wang Liguo; Yu Chunlei; Li Mengwei; Song Shuhui; Hao Lili; Ma Lina*; Zhang Zhang*; Computational identification and characterization of glioma candidate biomarkers through multi-omics integrative profiling, Biology Direct, 2020, 15(1): 10.

10.    Teng Xufei#; Li Qianpeng#; Li Zhao#; Zhang Yuansheng#; Niu Guangyi; Xiao Jingfa; Yu Jun*; Zhang Zhang*; Song Shuhui*; Compositional Variability and Mutation Spectra of Monophyletic SARS-CoV-2 Clades, Genomics, Proteomics & Bioinformatics, 2020, 18(6): 648-663.

2019年度

1.       BIG Data Center Members; Song Shuhui#; Zhang Zhang*; Zhao Wenming*; Xiao Jingfa*; Bao Yiming*; Database Resources of the BIG Data Center in 2019, Nucleic Acids Research, 2019, 47(D1): D8-D14.

2.       Song Shuhui*; Zhang Zhang*; Database Resources in BIG Data Center: Submission, Archiving, and Integration of Big Data in Plant Science, Molecular  Plant, 2019, 12(3): 279-281.

2018年度

1.       Song Shuhui*; Tian Dongmei; Zhang Zhang; Hu Songnian; Yu Jun*; Rice Genomics: over the Past Two Decades and into the Future, Genomics, Proteomics & Bioinformatics, 2018, 16(6): 397-404.

2.       BIG Data Center Members; Song Shuhui#; Zhang Zhang*; Zhao Wenming*; Xiao Jingfa*; Bao Yiming*; Database Resources of the BIG Data Center in 2018, Nucleic Acids Research, 2018, 46(D1): D14-D20.

3.       Song Shuhui#; Tian Dongmei#; Li Cuiping#; Tang Bixia#; Dong Lili#; Xiao Jingfa; Bao Yiming; Zhao Wenming; He Hang; Zhang Zhang*; Genome Variation Map: a data repository of genome variations in BIG Data Center, Nucleic Acids Research, 2018, 46(D1): D944-D949.

4.       Ma Chunhui#; Chang Mengqi#; Lv Hongyi#; Zhang Zhi-Wei; Zhang Weilong; He Xue; Wu Gaolang; Zhao Shunli; Zhang Yao; Wang Di; Teng Xufei; Liu Chunying; Li Qing; Klungland Arne; Niu Yamei*; Song Shuhui*; Tong Wei-Min*; RNA m6A methylation participates in regulation of postnatal development of the mouse cerebellum, Genome Biology, 2018, 19(1): 68.

2017年度

1.       BIG Data Center Members; Song Shuhui#; Zhang Zhang*; Zhao Wenming*; Xiao Jingfa*; The BIG Data Center: from deposition to integration to translation, Nucleic Acids Research, 2017, 45(D1): D18-D24.

2.       Chang Mengqi#; Lv Hongyi#; Zhang Weilong; Ma Chunhui; He Xue; Zhao Shunli; Zhang Zhi-Wei; Zeng Yi-Xin; Song Shuhui; Niu Yamei*; Tong Wei-Min*; Region-specific RNA m6A methylation represents a new layer of control in the gene regulatory network in the mouse brain, Open Biology, 2017, 7(9): 170166.

2016年度

1.       Li Dayong#; Huang Zhiyuan#; Song Shuhui#*; Xin Yeyun#*; Mao Donghai#; Lv Qiming#; Zhou Ming; Tian Dongmei; Tang Mingfeng; Wu Qi; Liu Xue; Chen Tingting; Song Xianwei; Fu Xiqin; Zhao Bingran; Liang Chengzhi; Li Aihong; Liu Guozhen; Li Shigui; Hu Songnian; Cao Xiaofeng; Yu Jun; Yuan Longping*; Chen Caiyan*; Zhu Lihuang*; Integrated analysis of phenome, genome, and transcriptome of hybrid rice uncovered multiple heterosis-related loci for yield increase, Proceedings of the National Academy of Sciences, 2016, 113(41): E6026-E6035.

2015年度

1.       Wang Xiliang#; Song Shuhui#*; Wu YongSheng#; Li YuLi; Chen Tingting; Huang Zhiyuan; Liu Shuo; Dunwell Thomas L.; Pfeifer Gerd P.; Dunwell Jim M.; Wamaedeesa Raheema; Ullah Ihsan; Wang Yinsheng; Hu Songnian*; Genome-wide mapping of 5-hydroxymethylcytosine in three rice cultivars reveals its preferential localization in transcriptionally silent transposable element genes, Journal of Experimental Botany, 2015, 66(21): 6651-6663.

2.       Li Yuli#; Wang Xiliang#; Chen Tingting#; Yao Fuwen; Li Cuiping; Tang Qingli; Sun Min; Sun Gaoyuan; Hu Songnian; Yu Jun; Song Shuhui*; RNA-Seq Based De Novo Transcriptome Assembly and Gene Discovery of Cistanche deserticola Fleshy Stem, PLOS ONE, 2015, 10(5): e0125722.

2014年度

1.       Di Ran#; He Jianning#; Song Shuhui#; Tian Dongmei#; Liu Qiuyue; Liang Xiaojun; Ma Qing; Sun Min; Wang Jiandong; Zhao Wenming; Cao Guiling; Wang Jinxin; Yang Zhimin; Ge Ying; Chu Mingxing*; Characterization and comparative profiling of ovarian microRNAs during ovine anestrus and the breeding season, BMC Genomics, 2014, 15(1): 899.

2.       Li Yuli#; Wang Xiliang; Li Cuiping; Hu Songnian; Yu Jun*; Song Shuhui#*; Transcriptome-wide N(6)-methyladenosine profiling of rice callus and leaf reveals the presence of tissue-specific competitors involved in selective mRNA modification, RNA Biology, 2014, 11(9): 1180-1188.