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Zhenglin Du
Zhenglin Du

Senior Engineer

Precision Medicine

Email: duzl (AT) big.ac.cn

Tel: +86 (10) 8409-7708

PROFESSIONAL EXPERIENCE

  • Senior Engineer in Beijing Institute of Genomics, Chinese Academy of Sciences (CAS), China, 2011−Present

  • Engineer in Beijing Institute of Genomics, Chinese Academy of Sciences (CAS), China, 2008−2011

  • Research Scientist in Beijing Genomics Institute, Shenzhen, China, 2007−2008

EDUCATION

  • PhD in Biochemistry & Molecular Biology, China Agricultural University, China, 2007

  • BS in Biology, China Agricultural University, China, 2002

RESEARCH INTERESTS

  • Big data integration and curation

  • de novo genome assembly and annotation

  • Comparative genomic analysis

  • Omics research on cancer

PROJECTS & RESOURCES

  • GOBOND

PUBLICATIONS

  1. Xie J, Shi H, Du Z, Wang T, Liu X, Chen S: Comparative genomic and functional analysis reveal conservation of plant growth promoting traits in Paenibacillus polymyxa and its closely related species. Scientific reports 2016, 6:21329.

  2. Liu S, Luo J, Chai J, Ren L, Zhou Y, Huang F, Liu X, Chen Y, Zhang C, Tao M, Lu B, Zhou W, Lin G, Mai C, Yuan S, Wang J, Li T, Qin Q, Feng H, Luo K, Xiao J, Zhong H, Zhao R, Duan W, Song Z, Wang Y, Wang J, Zhong L, Wang L, Ding Z, Du Z, Lu X, Gao Y, Murphy RW, Liu Y, Meyer A, Zhang YP: Genomic incompatibilities in the diploid and tetraploid offspring of the goldfish x common carp cross. Proceedings of the National Academy of Sciences of the United States of America 2016. [PMID=26768847]

  3. Wei S, Du Z, Gao F, Ke X, Li J, Liu J, Zhou Y: Global Transcriptome Profiles of 'Meyer' Zoysiagrass in Response to Cold Stress. PloS one 2015, 10(6):e0131153.

  4. Miao Z, Xu W, Li D, Hu X, Liu J, Zhang R, Tong Z, Dong J, Su Z, Zhang L, Sun M, Li W, Du Z, Hu S, Wang T: De novo transcriptome analysis of Medicago falcata reveals novel insights about the mechanisms underlying abiotic stress-responsive pathway. BMC genomics 2015, 16(1):818.

  5. Li B, Zong Y, Du Z, Chen Y, Zhang Z, Qin G, Zhao W, Tian S: Genomic Characterization Reveals Insights Into Patulin Biosynthesis and Pathogenicity in Penicillium Species.Molecular plant-microbe interactions : MPMI 2015, 28(6):635-647.

  6. Ding J, Zhao L, Chang Y, Zhao W, Du Z, Hao Z: Transcriptome sequencing and characterization of Japanese scallop Patinopecten yessoensis from different shell color lines. PloS one 2015, 10(2):e0116406.

  7. Zhou P, Zhang G, Chen S, Jiang Z, Tang Y, Henrissat B, Yan Q, Yang S, Chen CF, Zhang B, Du Z: Genome sequence and transcriptome analyses of the thermophilic zygomycete fungus Rhizomucor miehei. BMC genomics 2014, 15:294

  8. Xie JB, Du Z, Bai L, Tian C, Zhang Y, Xie JY, Wang T, Liu X, Chen X, Cheng Q, Chen S, Li J: Comparative genomic analysis of N2-fixing and non-N2-fixing Paenibacillus spp.: organization, evolution and expression of the nitrogen fixation genes. PLoS genetics 2014, 10(3):e1004231.

  9. Zhang F, Du Z, Huang L, Vera Cruz C, Zhou Y, Li Z: Comparative transcriptome profiling reveals different expression patterns in Xanthomonas oryzae pv. oryzae strains with putative virulence-relevant genes. PloS one 2013, 8(5):e64267.

  10. Huang Y, Li Y, Burt DW, Chen H, Zhang Y, Qian W, Kim H, Gan S, Zhao Y, Li J, Yi K, Feng H, Zhu P, Li B, Liu Q, Fairley S, Magor KE, Du Z, Hu X, Goodman L, Tafer H, Vignal A, Lee T, Kim KW, Sheng Z, An Y, Searle S, Herrero J, Groenen MA, Crooijmans RP, Faraut T, Cai Q, Webster RG, Aldridge JR, Warren WC, Bartschat S, Kehr S, Marz M, Stadler PF, Smith J, Kraus RH, Zhao Y, Ren L, Fei J, Morisson M, Kaiser P, Griffin DK, Rao M, Pitel F, Wang J, Li N: The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. Nature genetics 2013, 45(7):776-783.

  11. Wang J, Wang W, Li R, Li Y, Tian G, Goodman L, Fan W, Zhang J, Li J, Zhang J, Guo Y, Feng B, Li H, Lu Y, Fang X, Liang H, Du Z, Li D, Zhao Y, Hu Y, Yang Z, Zheng H, Hellmann I, Inouye M, Pool J, Yi X, Zhao J, Duan J, Zhou Y, Qin J, Ma L, Li G, Yang Z, Zhang G, Yang B, Yu C, Liang F, Li W, Li S, Li D, Ni P, Ruan J, Li Q, Zhu H, Liu D, Lu Z, Li N, Guo G, Zhang J, Ye J, Fang L, Hao Q, Chen Q, Liang Y, Su Y, San A, Ping C, Yang S, Chen F, Li L, Zhou K, Zheng H, Ren Y, Yang L, Gao Y, Yang G, Li Z, Feng X, Kristiansen K, Wong GK, Nielsen R, Durbin R, Bolund L, Zhang X, Li S, Yang H, Wang J: The diploid genome sequence of an Asian individualm. Nature 2008, 456(7218):60-65.