Os10g0491000
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Contents
Annotated Information
Function
This gene is originaly derived from the Oryza sativa Japonica Group(cultivar: Nipponbare). It encodes a kind of basic secretory protein in rice suspension-cultured cells. And study shows that this protein showed homology to proteins induced by biotic stress in the Arabidopsis.[1].The protein belongs to BSP surperfamily. BSP,Peptidase of plants and bacteria; These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens. SO we believe that the gene will upregulate and plays an important roe in the process of against pathogens.The following is its BSP domain and its structure.
15 molecular pathways with links to genes including menbrane-bounded organelle、cytolasmic vesicle、cytomlasm、vesicle、cell and cellular component and so on. The protein of the gene encodes is the basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
Expression
The gene encodes a protein in Oryza sativa and it has 15 GEO profiles. and these GEO profiles suggest that the product of the gene is very important for Oryza sativa. The following pictures are the 15 GEO profiles,and we can see its related functions., ; ;; ;; ;; ;; ;; ;.
The gene has two homologenes exclusive to O.sativa ,and its ID is Os10g0490800 and Os10g0490900. Os10g0490800 encodes a protein(NP 001064924.1) with 228 amino acid while Os10g0490900 a protein (NP 001064925.2)with 179 amino acid. of course,these two protein are also in the BSP surperfamily. you can see the information at the websit: http://www.ncbi.nlm.nih.gov/homologene/129425
Evolution
The gene has 25 SNPs show in the following seqences. These SNPs are intron variants
1.TAAAATTTTTTATCATATCAAAATT[C/T]TTTTACACATATAAATTTTAAACTT 2.ATGTGTTTAGTTCACATTAAAGGTT[G/T]AAAGTTTGGTTAAAAATAGAACGAT 3.TGTGTTTAGTTCACATTAAAGGTTG[A/T]AAGTTTGGTTAAAAATAGAACGATG 4.CTGGCCGTGGCCGCGTCGTCGTCGC[C/T]GCCGCCCGCCGCCGCCGTCACCTAC 5.ACCATCCAAACTACACCTAGACTGT[C/G]TAGACTGTGTTTAGTTCACGTCAAA 6.TAGACTGTCTAGACTGTGTTTAGTT[C/T]ACGTCAAAATTAAAAGTTTGGTTAA 7.AAAGTTTGGTTAAAATTAGAACGAT[A/G]TGATGAAAAAGTTTAAAGTTTATAT 8.AAAACTTCGGATCTAAACATGGTGA[C/T]AATCAACGATAATATTTACGGTGTT 9.CAAACATTGTGTTTATTTTTAAAAA[A/G]TTCTAGAAAAGTTATTTTTAAAAAT 10.TCGATGTCCCCAAACAAAATTAAAT[C/T]TAATCAACCACAACTTTTACGACAA 11.GATAGAATAAAGGGACGCTGTCTAG[A/T]TTTCAATCACATGAAAAATACTTGC 12.TTTTACGACAATCTCTAGTTTTTCC[A/G]AATAATCAAGTTATTTTTTCTCATA 13.TAATAAATGTGACCATAGATGACTA[A/G]AATTCCAACCCCGATCGATGTCCCC 14.CGGCTACGTCGCCGGCGTCACCGGC[A/C]ACGACTTCAAGACGCAGGTAATTAA 15.TCTGCACGCACGTCCCAAACATTGT[G/T]TTTATTTTTAAAAAGTTCTAGAAAA 16.TCTGCACGCACGTCCCAAACATTGT[G/T]TTTATTTTTAAAAAGTTCTAGAAAA 17.AGAGAGTAAAACTATTTCGTTTTCT[A/G]CACGCACGTCCCAAACATTGTGTTT 18.GGATCTAAACATGGTGACAATCAAC[G/T]ATAATATTTACGGTGTTCCTACTAA 19.AGCTATGGAGTTTACACAATTATTG[C/T]ATTGCTTACGGATGATAGAATAAAG 20.AAAATTAGAACGATGTGATGAAAAA[A/G]TTTAAAGTTTATGTGTGTAGAAAAG 21.TTTACGGTGTTCCTACTAAGACTTC[A/G]TTCGGCAATGGCTAAATTAAAGAGA 22.GAGTAAAACTATTTCGTTTTCTGCA[C/T]GCACGTCCCAAACATTGTGTTTATT 23.TCATCTTGTTTTATATATCTTCTCA[A/T]TTTTTCTCTTTCCCATCATCTTAAA 24.ACTAAGACTTCGTTCGGCAATGGCT[A/G]AATTAAAGAGAGTAAAACTATTTCG 25.CCAAACAAAATTAAATCTAATCAAC[C/T]ACAACTTTTACGACAATCTCTAGTT
Labs working on this gene
1.Triticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, 611130 Sichuan, China; 2.Key Laboratory of Southwestern Crop Germplasm Utilization, Ministry of Agriculture, Sichuan Agricultural University, Wenjiang, Chengdu, 611130 Sichuan, China; 3.CSIRO Plant Industry, 306 Carmody Road,St Lucia, QLD 4067, Australia; 4.Umea Plant Science Center, Department of Plant Physiology, Umea University, 901 87 Umea, Sweden; 5. Department of Biotechnology, Kungliga Tekniska Ho¨ gskolan, Royal Institute of Technology, Stockholm Center for Physics, Astronomy, and Biotechnology,106 91 Stockholm, Sweden ; 6. The Institute for Genomic Research Rockville, MD 20850, USA; 7.Arizona Genomics Institute, University of Arizona, Tucson, AZ 85721-0036, USA, 8.Cold Spring Harbor Laboratory Cold Spring Harbor, NY 11724, USA 9.The Plant Genome Initiative at Rutgers, Waksman Institute, Rutgers University, Piscataway, NJ 08854, USA
References
1.Rupali Bhalerao, Johanna Keskitalo, Fredrik Sterky,et al. Gene Expression in Autumn Leaves.Plant Physiology, 2003,2(131): 430–442. 2.Wei Tao Li, Chunji Liu, YaXi Liu,et al.Meta-analysis of QTL associated with tolerance to abiotic stresses in barley.Euphytica, 2013,189:31–49
