RiceWiki:GeneFamilies

The curation of Rice Gene Families for both Japonica and Indica group is one of the objectives of RiceWiki, we cordially invite you to make it with us! You can either enrich the information of existed gene family pages, or create a new gene family page. We are also very glad if you can identify any new memebers of specific gene family or delete the redundant ones.

Gene Families under Curation

Gene Family	Number	Pfam & InterPro	Last update
AP2/ERF	Japnoica (111) & Indica (156)	Pfam: PF00847 & InterPro: IPR001471	2013-07-13
ARF	Japnoica (24) & Indica (24)	Pfam: PF06507 & InterPro: IPR010525	2013-07-21
bHLH	Japnoica (101) & Indica (107)	Pfam: PF00010 & InterPro: IPR011598	2013-07-21
bZIP	Japnoica (72) & Indica (84)	Pfam: PF00170 & InterPro:IPR004827	2013-06-10
Sucrose synthase	Japnoica (9) & Indica (13)	Pfam: PF00862 & InterPro: IPR000368	2013-07-17
HSF	Japnoica (23) & Indica (28)	Pfam: PF00447 & InterPro: IPR000232	2013-07-12
MADS-box	Japnoica (42) & Indica (67)	Pfam: PF00319 & InterPro: IPR002100	2012-05-14
MYB	Japnoica (195) & Indica (264)	Pfam: PF00249 & InterPro: IPR001005	2013-07-16
NAC	Japnoica (91) & Indica (124)	Pfam: PF02365 & InterPro: IPR003441	2013-07-15
SBP	Japnoica (17) & Indica (20)	Pfam: PF03110 & InterPro: IPR004333	2013-07-21
WRKY	Japnoica (79) & Indica (109)	Pfam: PF03106 & InterPro: IPR003657	2013-06-12

Gene Families to Be Curated

ABI3/VP1	Alfin	ARID	Ascorbate Peroxidase
AUX/IAA	BBR/BPC	AS2	ATP-dependent metalloprotease
BTB	C2C2-CO-like	BES1	C2C2-Dof
Calmodulin	Receptor-Like Kinase	Phytochelatins synthetase	Yellow stripe-like
Core Replication Machinery	C2H2 zinc finger	C3H	Conserved peptide uORF
Cellulose Synthase	Endo-Beta-Mannanases	FHA	GRAS
FXYD	TRPM	TRP ion channel	Glutaredoxin
Glycosyl Hydrolase Family 1	Indole-3-acetic-acid synthetase	GRF	HKT transporters
Type-A Response Regulators	JUMONJI	MAPKs	PLATZ
TUB	Trihelix	TCP	TAZ
ZF-HD	ZIM