Difference between revisions of "AP2/ERF"

Revision as of 06:40, 13 July 2013

Brief Introduction

The AP2/ERF superfamily,one of the largest groups of transcription factors in plants, is defined by the AP2/ERF domain, which consists of about 60 to 70 amino acid residues and is involved in DNA binding^[1]^[2]^[3].

Figure 1. Gene structure of BGIOSGA010867 (AP2)

This superfamily can be classified into three gene families: AP2, ERF and RAV based on sequence similarities and the number of AP2/ERF domains. The AP2 family proteins contain two repeated AP2/ERF domains, the ERF family proteins contain a single AP2/ERF domain, and the RAV family proteins contain a B3 domain in addition to the single AP2/ERF domain^[1]^[2]^[3].

Figure 2. Gene structure of BGIOSGA02253 (ERF)

Figure 3. Gene structure of Os01g0141000 (RAV)

Genes in the AP2 family have been reported to participate in a series of biological processes, including the regulation of flower development, spikelet meristem determinacy, leaf epidermal cell identity and embryo development^[1]^[2]^[3]. Recently, the involvement of members of the RAV family in ethylene response and in brassinosteroid response was reported^[1]^[3]. ERF family were identified and implicated in many diverse functions in cellular processes, such as hormonal signal transduction, response to biotic and abiotic stresses and regulation of metabolism and in developmental processes in various plant species^[1]^[2].

Pfam: PF00847 || InterPro: IPR001471 ||

Japonica Group

Os09g0423800	Os04g0653600	Os03g0232200	Os03g0313100	Os07g0235800
Os08g0442400	Os12g0126300	Os06g0657500	Os07g0124700	Os05g0121600
Os04g0257500	Os09g0369000	Os04g0398000	Os07g0227600	Os08g0474000
Os01g0797600	Os03g0191900	Os01g0752500	Os11g0168500	Os02g0655200
Os03g0150200	Os05g0437133	Os05g0497300	Os01g0657400	Os09g0287000
Os02g0764700	Os04g0546800	Os01g0868000	Os02g0752800	Os09g0457900
Os08g0537900	Os06g0604000	Os08g0408500	Os10g0390800	Os04g0547600
Os02g0546600	Os01g0313300	Os05g0361700	Os12g0168100	Os08g0545400
Os07g0617000	Os02g0654700	Os09g0434500	Os04g0669200	Os12g0582900
Os01g0224100	Os03g0183000	Os07g0674800	Os04g0549700	Os02g0656600
Os03g0341000	Os03g0182800	Os02g0638650	Os05g0497200	Os10g0562900
Os01g0165000	Os04g0529100	Os02g0546800	Os02g0189600	Os06g0194000
Os02g0202000	Os05g0346200	Os04g0610400	Os05g0351200	Os02g0158000
Os05g0473300	Os03g0815800	Os06g0181700	Os02g0657000	Os03g0860100
Os02g0797100	Os02g0782700	Os04g0399800	Os08g0565200	Os04g0550200
Os05g0316800	Os06g0127100	Os09g0522200	Os07g0669500	Os02g0677300
Os03g0263000	Os09g0522100	Os03g0117900	Os06g0210300	Os02g0594300
Os07g0410300	Os09g0286600	Os10g0560700	Os06g0691100	Os01g0200600
Os04g0572400	Os08g0545500	Os07g0410700	Os06g0166400	Os02g0614300
Os08g0173700	Os04g0648900	Os03g0818800	Os09g0309700	Os02g0676800
Os09g0572000	Os08g0521600	Os01g0899800	Os01g0968800	Os12g0603300
Os06g0165600	Os09g0522000	Os01g0141000	Os01g0131600	Os05g0549800
Os01g0693400

Indica Group

BGIOSGA017250	BGIOSGA030783	BGIOSGA020813	BGIOSGA025426	BGIOSGA016726
BGIOSGA013826	BGIOSGA028751	BGIOSGA034580	BGIOSGA036704	BGIOSGA018911
BGIOSGA021927	BGIOSGA017263	BGIOSGA011170	BGIOSGA000316	BGIOSGA017664
BGIOSGA011350	BGIOSGA010867	BGIOSGA027579	BGIOSGA013636	BGIOSGA008619
BGIOSGA025077	BGIOSGA020753	BGIOSGA035153	BGIOSGA020812	BGIOSGA004677
BGIOSGA014193	BGIOSGA015474	BGIOSGA030624	BGIOSGA014194	BGIOSGA004611
BGIOSGA031822	BGIOSGA016313	BGIOSGA029205	BGIOSGA004470	BGIOSGA005557
BGIOSGA005624	BGIOSGA011298	BGIOSGA008740	BGIOSGA034432	BGIOSGA038064
BGIOSGA011868	BGIOSGA017796	BGIOSGA029206	BGIOSGA001090	BGIOSGA011963
BGIOSGA016873	BGIOSGA036561	BGIOSGA021643	BGIOSGA014605	BGIOSGA000428
BGIOSGA006362	BGIOSGA009068	BGIOSGA030907	BGIOSGA026544	BGIOSGA028650
BGIOSGA032849	BGIOSGA016874	BGIOSGA003364	BGIOSGA019928	BGIOSGA016883
BGIOSGA029071	BGIOSGA019701	BGIOSGA026545	BGIOSGA023903	BGIOSGA029230
BGIOSGA005915	BGIOSGA011328	BGIOSGA014134	BGIOSGA030816	BGIOSGA037681
BGIOSGA017525	BGIOSGA023726	BGIOSGA033447	BGIOSGA016882	BGIOSGA012597
BGIOSGA005966	BGIOSGA017797	BGIOSGA020923	BGIOSGA002846	BGIOSGA022463
BGIOSGA032793	BGIOSGA007748	BGIOSGA025360	BGIOSGA014673	BGIOSGA017088
BGIOSGA018232	BGIOSGA020033	BGIOSGA022471	BGIOSGA009571	BGIOSGA022427
BGIOSGA018253	BGIOSGA034227	BGIOSGA011329	BGIOSGA006249	BGIOSGA009392
BGIOSGA005433	BGIOSGA031114	BGIOSGA005480	BGIOSGA017558	BGIOSGA026464
BGIOSGA026461	BGIOSGA016884	BGIOSGA019608	BGIOSGA016321	BGIOSGA022472
BGIOSGA010868	BGIOSGA035887	BGIOSGA022362	BGIOSGA005542	BGIOSGA022219
BGIOSGA029415	BGIOSGA006285	BGIOSGA023741	BGIOSGA008804	BGIOSGA011061
BGIOSGA029416	BGIOSGA011723	BGIOSGA005486	BGIOSGA024035	BGIOSGA022531
BGIOSGA008532	BGIOSGA024429	BGIOSGA006366	BGIOSGA030065	BGIOSGA002184
BGIOSGA011326	BGIOSGA022479	BGIOSGA028781	BGIOSGA022480	BGIOSGA016950
BGIOSGA022380	BGIOSGA024428	BGIOSGA014220	BGIOSGA027571	BGIOSGA004939
BGIOSGA014221	BGIOSGA016949	BGIOSGA030019	BGIOSGA008802	BGIOSGA038325
BGIOSGA023403	BGIOSGA031313	BGIOSGA029017	BGIOSGA027003	BGIOSGA018034
BGIOSGA023401	BGIOSGA005257	BGIOSGA029417	BGIOSGA035885	BGIOSGA007836
BGIOSGA021939	BGIOSGA019793	BGIOSGA002753	BGIOSGA002748	BGIOSGA003032
BGIOSGA002708	BGIOSGA002747	BGIOSGA008254

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 Cite error: Invalid <ref> tag; no text was provided for refs named ref1
↑ ^2.0 ^2.1 ^2.2 ^2.3 Cite error: Invalid <ref> tag; no text was provided for refs named ref2
↑ ^3.0 ^3.1 ^3.2 ^3.3 Cite error: Invalid <ref> tag; no text was provided for refs named ref3

[ref1-1] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 Cite error: Invalid <ref> tag; no text was provided for refs named ref1

[ref2-2] 2.0 ^2.1 ^2.2 ^2.3 Cite error: Invalid <ref> tag; no text was provided for refs named ref2

[ref3-3] 3.0 ^3.1 ^3.2 ^3.3 Cite error: Invalid <ref> tag; no text was provided for refs named ref3

[1]

[2]

[3]

Difference between revisions of "AP2/ERF"

Revision as of 06:40, 13 July 2013

Brief Introduction

Japonica Group

Indica Group

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@@ Line 259: / Line 259: @@
 ||
+||
+||
+|}
+==''Indica'' Group==
+{| style="background:#A1A3A6; width:85%;" border="0"
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA017250]]'''
+||
+'''[[BGIOSGA030783]]'''
+||
+'''[[BGIOSGA020813]]'''
+||
+'''[[BGIOSGA025426]]'''
+||
+'''[[BGIOSGA016726]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA013826]]'''
+||
+'''[[BGIOSGA028751]]'''
+||
+'''[[BGIOSGA034580]]'''
+||
+'''[[BGIOSGA036704]]'''
+||
+'''[[BGIOSGA018911]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA021927]]'''
+||
+'''[[BGIOSGA017263]]'''
+||
+'''[[BGIOSGA011170]]'''
+||
+'''[[BGIOSGA000316]]'''
+||
+'''[[BGIOSGA017664]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA011350]]'''
+||
+'''[[BGIOSGA010867]]'''
+||
+'''[[BGIOSGA027579]]'''
+||
+'''[[BGIOSGA013636]]'''
+||
+'''[[BGIOSGA008619]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA025077]]'''
+||
+'''[[BGIOSGA020753]]'''
+||
+'''[[BGIOSGA035153]]'''
+||
+'''[[BGIOSGA020812]]'''
+||
+'''[[BGIOSGA004677]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA014193]]'''
+||
+'''[[BGIOSGA015474]]'''
+||
+'''[[BGIOSGA030624]]'''
+||
+'''[[BGIOSGA014194]]'''
+||
+'''[[BGIOSGA004611]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA031822]]'''
+||
+'''[[BGIOSGA016313]]'''
+||
+'''[[BGIOSGA029205]]'''
+||
+'''[[BGIOSGA004470]]'''
+||
+'''[[BGIOSGA005557]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA005624]]'''
+||
+'''[[BGIOSGA011298]]'''
+||
+'''[[BGIOSGA008740]]'''
+||
+'''[[BGIOSGA034432]]'''
+||
+'''[[BGIOSGA038064]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA011868]]'''
+||
+'''[[BGIOSGA017796]]'''
+||
+'''[[BGIOSGA029206]]'''
+||
+'''[[BGIOSGA001090]]'''
+||
+'''[[BGIOSGA011963]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA016873]]'''
+||
+'''[[BGIOSGA036561]]'''
+||
+'''[[BGIOSGA021643]]'''
+||
+'''[[BGIOSGA014605]]'''
+||
+'''[[BGIOSGA000428]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA006362]]'''
+||
+'''[[BGIOSGA009068]]'''
+||
+'''[[BGIOSGA030907]]'''
+||
+'''[[BGIOSGA026544]]'''
+||
+'''[[BGIOSGA028650]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA032849]]'''
+||
+'''[[BGIOSGA016874]]'''
+||
+'''[[BGIOSGA003364]]'''
+||
+'''[[BGIOSGA019928]]'''
+||
+'''[[BGIOSGA016883]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA029071]]'''
+||
+'''[[BGIOSGA019701]]'''
+||
+'''[[BGIOSGA026545]]'''
+||
+'''[[BGIOSGA023903]]'''
+||
+'''[[BGIOSGA029230]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA005915]]'''
+||
+'''[[BGIOSGA011328]]'''
+||
+'''[[BGIOSGA014134]]'''
+||
+'''[[BGIOSGA030816]]'''
+||
+'''[[BGIOSGA037681]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA017525]]'''
+||
+'''[[BGIOSGA023726]]'''
+||
+'''[[BGIOSGA033447]]'''
+||
+'''[[BGIOSGA016882]]'''
+||
+'''[[BGIOSGA012597]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA005966]]'''
+||
+'''[[BGIOSGA017797]]'''
+||
+'''[[BGIOSGA020923]]'''
+||
+'''[[BGIOSGA002846]]'''
+||
+'''[[BGIOSGA022463]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA032793]]'''
+||
+'''[[BGIOSGA007748]]'''
+||
+'''[[BGIOSGA025360]]'''
+||
+'''[[BGIOSGA014673]]'''
+||
+'''[[BGIOSGA017088]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA018232]]'''
+||
+'''[[BGIOSGA020033]]'''
+||
+'''[[BGIOSGA022471]]'''
+||
+'''[[BGIOSGA009571]]'''
+||
+'''[[BGIOSGA022427]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA018253]]'''
+||
+'''[[BGIOSGA034227]]'''
+||
+'''[[BGIOSGA011329]]'''
+||
+'''[[BGIOSGA006249]]'''
+||
+'''[[BGIOSGA009392]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA005433]]'''
+||
+'''[[BGIOSGA031114]]'''
+||
+'''[[BGIOSGA005480]]'''
+||
+'''[[BGIOSGA017558]]'''
+||
+'''[[BGIOSGA026464]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA026461]]'''
+||
+'''[[BGIOSGA016884]]'''
+||
+'''[[BGIOSGA019608]]'''
+||
+'''[[BGIOSGA016321]]'''
+||
+'''[[BGIOSGA022472]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA010868]]'''
+||
+'''[[BGIOSGA035887]]'''
+||
+'''[[BGIOSGA022362]]'''
+||
+'''[[BGIOSGA005542]]'''
+||
+'''[[BGIOSGA022219]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA029415]]'''
+||
+'''[[BGIOSGA006285]]'''
+||
+'''[[BGIOSGA023741]]'''
+||
+'''[[BGIOSGA008804]]'''
+||
+'''[[BGIOSGA011061]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA029416]]'''
+||
+'''[[BGIOSGA011723]]'''
+||
+'''[[BGIOSGA005486]]'''
+||
+'''[[BGIOSGA024035]]'''
+||
+'''[[BGIOSGA022531]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA008532]]'''
+||
+'''[[BGIOSGA024429]]'''
+||
+'''[[BGIOSGA006366]]'''
+||
+'''[[BGIOSGA030065]]'''
+||
+'''[[BGIOSGA002184]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA011326]]'''
+||
+'''[[BGIOSGA022479]]'''
+||
+'''[[BGIOSGA028781]]'''
+||
+'''[[BGIOSGA022480]]'''
+||
+'''[[BGIOSGA016950]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA022380]]'''
+||
+'''[[BGIOSGA024428]]'''
+||
+'''[[BGIOSGA014220]]'''
+||
+'''[[BGIOSGA027571]]'''
+||
+'''[[BGIOSGA004939]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA014221]]'''
+||
+'''[[BGIOSGA016949]]'''
+||
+'''[[BGIOSGA030019]]'''
+||
+'''[[BGIOSGA008802]]'''
+||
+'''[[BGIOSGA038325]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA023403]]'''
+||
+'''[[BGIOSGA031313]]'''
+||
+'''[[BGIOSGA029017]]'''
+||
+'''[[BGIOSGA027003]]'''
+||
+'''[[BGIOSGA018034]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA023401]]'''
+||
+'''[[BGIOSGA005257]]'''
+||
+'''[[BGIOSGA029417]]'''
+||
+'''[[ BGIOSGA035885]]'''
+||
+'''[[BGIOSGA007836]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA021939]]'''
+||
+'''[[BGIOSGA019793]]'''
+||
+'''[[BGIOSGA002753]]'''
+||
+'''[[BGIOSGA002748]]'''
+||
+'''[[BGIOSGA003032]]'''
+|-style="background:white; color:black" align="center"
+!
+'''[[BGIOSGA002708]]'''
+||
+'''[[BGIOSGA002747]]'''
+||
+'''[[BGIOSGA008254]]'''
 ||