Difference between revisions of "RiceWiki:GeneFamilies"
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|-style="background:white; color:black" align="center" | |-style="background:white; color:black" align="center" | ||
! | ! | ||
| − | ABI3/VP1 | + | '''ABI3/VP1''' |
|| | || | ||
| − | Alfin | + | '''Alfin''' |
|| | || | ||
| − | ARID | + | '''ARID''' |
|| | || | ||
| − | Ascorbate Peroxidase | + | '''Ascorbate Peroxidase''' |
|-style="background:white; color:black" align="center" | |-style="background:white; color:black" align="center" | ||
! | ! | ||
| − | AUX/IAA | + | '''AUX/IAA''' |
|| | || | ||
| − | BBR/BPC | + | '''BBR/BPC''' |
|| | || | ||
| − | AS2 | + | '''AS2''' |
|| | || | ||
ATP-dependent metalloprotease | ATP-dependent metalloprotease | ||
|-style="background:white; color:black" align="center" | |-style="background:white; color:black" align="center" | ||
! | ! | ||
| − | BTB | + | '''BTB''' |
|| | || | ||
| − | C2C2-CO-like | + | '''C2C2-CO-like''' |
|| | || | ||
| − | BES1 | + | '''BES1''' |
|| | || | ||
| − | C2C2-Dof | + | '''C2C2-Dof''' |
|-style="background:white; color:black" align="center" | |-style="background:white; color:black" align="center" | ||
! | ! | ||
| − | Calmodulin | + | '''Calmodulin''' |
|| | || | ||
| − | Receptor-Like Kinase | + | '''Receptor-Like Kinase''' |
|| | || | ||
| − | Phytochelatins synthetase | + | '''Phytochelatins synthetase''' |
|| | || | ||
| − | Yellow stripe-like | + | '''Yellow stripe-like''' |
|-style="background:white; color:black" align="center" | |-style="background:white; color:black" align="center" | ||
! | ! | ||
| − | Core Replication Machinery | + | '''Core Replication Machinery''' |
|| | || | ||
| − | C2H2 zinc finger | + | '''C2H2 zinc finger''' |
|| | || | ||
| − | C3H | + | '''C3H''' |
|| | || | ||
| − | Conserved peptide uORF | + | '''Conserved peptide uORF''' |
|-style="background:white; color:black" align="center" | |-style="background:white; color:black" align="center" | ||
! | ! | ||
| − | Cellulose Synthase | + | '''Cellulose Synthase''' |
|| | || | ||
| − | Endo-Beta-Mannanases | + | '''Endo-Beta-Mannanases''' |
|| | || | ||
| − | FHA | + | '''FHA''' |
|| | || | ||
| − | GRAS | + | '''GRAS''' |
|-style="background:white; color:black" align="center" | |-style="background:white; color:black" align="center" | ||
! | ! | ||
| − | FXYD | + | '''FXYD''' |
|| | || | ||
| − | TRPM | + | '''TRPM''' |
|| | || | ||
| − | TRP ion channel | + | '''TRP ion channel''' |
|| | || | ||
| − | Glutaredoxin | + | '''Glutaredoxin''' |
|-style="background:white; color:black" align="center" | |-style="background:white; color:black" align="center" | ||
! | ! | ||
| − | Glycosyl Hydrolase Family 1 | + | '''Glycosyl Hydrolase Family 1''' |
|| | || | ||
| − | Indole-3-acetic-acid synthetase | + | '''Indole-3-acetic-acid synthetase''' |
|| | || | ||
| − | GRF | + | '''GRF''' |
|| | || | ||
| − | HKT transporters | + | '''HKT transporters''' |
|-style="background:white; color:black" align="center" | |-style="background:white; color:black" align="center" | ||
! | ! | ||
| − | Type-A Response Regulators | + | '''Type-A Response Regulators''' |
|| | || | ||
| − | JUMONJI | + | '''JUMONJI''' |
|| | || | ||
| − | MAPKs | + | '''MAPKs''' |
|| | || | ||
| − | PLATZ | + | '''PLATZ''' |
|-style="background:white; color:black" align="center" | |-style="background:white; color:black" align="center" | ||
! | ! | ||
| − | TUB | + | '''TUB''' |
|| | || | ||
| − | Trihelix | + | '''Trihelix''' |
|| | || | ||
| − | TCP | + | '''TCP''' |
|| | || | ||
| − | TAZ | + | '''TAZ''' |
|-style="background:white; color:black" align="center" | |-style="background:white; color:black" align="center" | ||
! | ! | ||
| − | ZF-HD | + | '''ZF-HD''' |
|| | || | ||
| − | ZIM | + | '''ZIM''' |
|| | || | ||
Revision as of 17:58, 21 July 2013
The curation of Rice Gene Families for both Japonica and Indica group is one of the objectives of RiceWiki, we cordially invite you to make it with us! You can either enrich the information of existed gene family pages, or create a new gene family page. We are also very glad if you can identify any new memebers of specific gene family or delete the redundant ones.
Gene Families under Curation
| Gene Family | Number | Pfam & InterPro | Last update |
|---|---|---|---|
| AP2/ERF | Japnoica (111) & Indica (156) | Pfam: PF00847 & InterPro: IPR001471 | 2013-07-13 |
| ARF | Japnoica (24) & Indica (24) | Pfam: PF06507 & InterPro: IPR010525 | 2013-07-21 |
| bHLH | Japnoica (101) & Indica (107) | Pfam: PF00010 & InterPro: IPR011598 | 2013-07-21 |
| bZIP | Japnoica (72) & Indica (84) | Pfam: PF00170 & InterPro:IPR004827 | 2013-06-10 |
| Sucrose synthase | Japnoica (9) & Indica (13) | Pfam: PF00862 & InterPro: IPR000368 | 2013-07-17 |
| HSF | Japnoica (23) & Indica (28) | Pfam: PF00447 & InterPro: IPR000232 | 2013-07-12 |
| MADS-box | Japnoica (42) & Indica (67) | Pfam: PF00319 & InterPro: IPR002100 | 2012-05-14 |
| MYB | Japnoica (195) & Indica (264) | Pfam: PF00249 & InterPro: IPR001005 | 2013-07-16 |
| NAC | Japnoica (91) & Indica (124) | Pfam: PF02365 & InterPro: IPR003441 | 2013-07-15 |
| SBP | Japnoica (17) & Indica (20) | Pfam: PF03110 & InterPro: IPR004333 | 2013-07-21 |
| WRKY | Japnoica (79) & Indica (109) | Pfam: PF03106 & InterPro: IPR003657 | 2013-06-12 |
Gene Families to Be Curated
|
ABI3/VP1 |
Alfin |
ARID |
Ascorbate Peroxidase |
|---|---|---|---|
|
AUX/IAA |
BBR/BPC |
AS2 |
ATP-dependent metalloprotease |
|
BTB |
C2C2-CO-like |
BES1 |
C2C2-Dof |
|
Calmodulin |
Receptor-Like Kinase |
Phytochelatins synthetase |
Yellow stripe-like |
|
Core Replication Machinery |
C2H2 zinc finger |
C3H |
Conserved peptide uORF |
|
Cellulose Synthase |
Endo-Beta-Mannanases |
FHA |
GRAS |
|
FXYD |
TRPM |
TRP ion channel |
Glutaredoxin |
|
Glycosyl Hydrolase Family 1 |
Indole-3-acetic-acid synthetase |
GRF |
HKT transporters |
|
Type-A Response Regulators |
JUMONJI |
MAPKs |
PLATZ |
|
TUB |
Trihelix |
TCP |
TAZ |
|
ZF-HD |
ZIM |
