Difference between revisions of "RiceWiki:GeneFamilies"
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The curation of '''Rice Gene Families''' for both '''''Japonica''''' and '''''Indica''''' group is one of the objectives of RiceWiki, we cordially invite you to make it with us! You can either enrich the information of existed gene family pages, or create a new gene family page. We are also very glad if you can identify any new memebers of specific gene family or delete the redundant ones. | The curation of '''Rice Gene Families''' for both '''''Japonica''''' and '''''Indica''''' group is one of the objectives of RiceWiki, we cordially invite you to make it with us! You can either enrich the information of existed gene family pages, or create a new gene family page. We are also very glad if you can identify any new memebers of specific gene family or delete the redundant ones. | ||
| − | ==Gene Families under Curation== | + | =='''Gene Families under Curation'''== |
{|class="wikitable sortable" style="width:90%;text-align:center" | {|class="wikitable sortable" style="width:90%;text-align:center" | ||
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| − | ==Gene Families to Be Curated== | + | =='''Gene Families to Be Curated'''== |
{| style="background:#A1A3A6; width:90%;" | {| style="background:#A1A3A6; width:90%;" | ||
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'''ARID''' | '''ARID''' | ||
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| − | '''Ascorbate Peroxidase''' | + | '''Ascorbate Peroxidase''' |
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! | ! | ||
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'''BBR/BPC''' | '''BBR/BPC''' | ||
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| − | '''AS2''' | + | '''AS2''' |
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'''ATP-dependent metalloprotease''' | '''ATP-dependent metalloprotease''' | ||
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|-style="background:white; color:black" align="center" | |-style="background:white; color:black" align="center" | ||
! | ! | ||
| − | ''' FXYD''' | + | '''FXYD''' |
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'''TRPM''' | '''TRPM''' | ||
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'''TUB''' | '''TUB''' | ||
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| − | '''Trihelix''' | + | '''Trihelix''' |
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'''TCP''' | '''TCP''' | ||
Latest revision as of 17:58, 21 July 2013
The curation of Rice Gene Families for both Japonica and Indica group is one of the objectives of RiceWiki, we cordially invite you to make it with us! You can either enrich the information of existed gene family pages, or create a new gene family page. We are also very glad if you can identify any new memebers of specific gene family or delete the redundant ones.
Gene Families under Curation
| Gene Family | Number | Pfam & InterPro | Last update |
|---|---|---|---|
| AP2/ERF | Japnoica (111) & Indica (156) | Pfam: PF00847 & InterPro: IPR001471 | 2013-07-13 |
| ARF | Japnoica (24) & Indica (24) | Pfam: PF06507 & InterPro: IPR010525 | 2013-07-21 |
| bHLH | Japnoica (101) & Indica (107) | Pfam: PF00010 & InterPro: IPR011598 | 2013-07-21 |
| bZIP | Japnoica (72) & Indica (84) | Pfam: PF00170 & InterPro:IPR004827 | 2013-06-10 |
| Sucrose synthase | Japnoica (9) & Indica (13) | Pfam: PF00862 & InterPro: IPR000368 | 2013-07-17 |
| HSF | Japnoica (23) & Indica (28) | Pfam: PF00447 & InterPro: IPR000232 | 2013-07-12 |
| MADS-box | Japnoica (42) & Indica (67) | Pfam: PF00319 & InterPro: IPR002100 | 2012-05-14 |
| MYB | Japnoica (195) & Indica (264) | Pfam: PF00249 & InterPro: IPR001005 | 2013-07-16 |
| NAC | Japnoica (91) & Indica (124) | Pfam: PF02365 & InterPro: IPR003441 | 2013-07-15 |
| SBP | Japnoica (17) & Indica (20) | Pfam: PF03110 & InterPro: IPR004333 | 2013-07-21 |
| WRKY | Japnoica (79) & Indica (109) | Pfam: PF03106 & InterPro: IPR003657 | 2013-06-12 |
Gene Families to Be Curated
|
ABI3/VP1 |
Alfin |
ARID |
Ascorbate Peroxidase |
|---|---|---|---|
|
AUX/IAA |
BBR/BPC |
AS2 |
ATP-dependent metalloprotease |
|
BTB |
C2C2-CO-like |
BES1 |
C2C2-Dof |
|
Calmodulin |
Receptor-Like Kinase |
Phytochelatins synthetase |
Yellow stripe-like |
|
Core Replication Machinery |
C2H2 zinc finger |
C3H |
Conserved peptide uORF |
|
Cellulose Synthase |
Endo-Beta-Mannanases |
FHA |
GRAS |
|
FXYD |
TRPM |
TRP ion channel |
Glutaredoxin |
|
Glycosyl Hydrolase Family 1 |
Indole-3-acetic-acid synthetase |
GRF |
HKT transporters |
|
Type-A Response Regulators |
JUMONJI |
MAPKs |
PLATZ |
|
TUB |
Trihelix |
TCP |
TAZ |
|
ZF-HD |
ZIM |
