Difference between revisions of "Os07g0124700"
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===Evolution=== | ===Evolution=== | ||
| − | + | Through a BLAST search using the amino acid sequence of CRL5, there are two homologous genes in rice, CRL5-like1 and CRL5-like2, which shared 57 and 49% amino acid identity,respectively, with CRL5. | |
| − | |||
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===Expression=== | ===Expression=== | ||
Revision as of 14:12, 1 June 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
1. CRL5 encodes a member of the APETALA2 (AP2)/EHYLENE RESPONSIVE FACTOR (ERF) transcription factor family.
2. CRL5 functions downstream of the AUXIN (AUX)/INDOLE-3-ACETIC ACID (IAA) and AUXIN RESPONSE FACTOR (ARF)-mediated auxin signaling pathways involved in crown root initiation.
3. Further analysis revealed that CRL5 upregulates a type-A response regulator(RR) of cytokinin signaling, OsRR1.
4. It indicated that auxin-induced CRL5 functions as a positive regulator of crown root initiation through repression of cytokinin signaling.
Evolution
Through a BLAST search using the amino acid sequence of CRL5, there are two homologous genes in rice, CRL5-like1 and CRL5-like2, which shared 57 and 49% amino acid identity,respectively, with CRL5.
Expression
Please input expression information here.
Labs working on this gene
Please input related labs here.
References
Please input cited references here.
Structured Information
| Gene Name |
Os07g0124700 |
|---|---|
| Description |
Similar to PLETHORA1 |
| Version |
NM_001065341.1 GI:115470414 GeneID:4342308 |
| Length |
4702 bp |
| Definition |
Oryza sativa Japonica Group Os07g0124700, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 7:1298598..1303299 |
| Sequence Coding Region |
1298600..1298630,1298781..1298789,1298901..1298989,1299091..1299164,1300196..1300246 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008400:1298598..1303299 source=RiceChromosome07 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008400:1298598..1303299 source=RiceChromosome07 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>aaggaaggccagaccaggaaagggaggcaagtttatctcggtgggtatgacatggaggagaaagcggcgagagcgtatgacctggcggcgctcaagtattggggcccttccacacacatcaacttcccgctggaggactaccaggaggagctggaggagatgaagaacatgacaaggcaggagtatgtggctcacttaaggaggaaaagtagcggtttctcacggggagcttccatgtaccgtggtgtcacaaggcatcatcagcacggacggtggcaggcacgcatcggccgagtctccggcaacaaggacctctacctcggcactttcagcacgcaggaggaggcggcggaggcgtacgacgtggcggcgatcaagttccgggggctcaacgccgtcaccaacttcgacatcacccgctacgacgtcgacaagatcatggccagcaacaccctcctccccgccgacctcgcccgccgcaacgccgccaccaccacctccaaggacgaccactccgccgccggcgccggcgccattgtctcggtgcactccgccgccgacatcgccgtcgccgacaccctctggaaggccaccactgccccgaggcagcagcagcagcaccacgacgacgtcgtgctgtccggcgccgaccaggccgcattctccgtcctccacgacctcgtcgccgtcgacgccgcggcggcgcaccagcagcagcagcagcagcagcacatgtccatgtcggcggcgtcgtcgctggtgacgagcctgagcaactcgcgcgaggggagccccgaccgcggcggcggcctctccatgctcttcgccaagccgtcgcccgccgtggcggcgtcggcgcagcagcaggcgtcgaccaagctcatggcggcgccgctgccgctcggctcctgggtctcctcgccgccggcgtctgccaggccgcccgccgtctccatcgcccacatgcccctcttcgccgcctggaccgacgcctaa</cdnaseq> |
| Protein Sequence |
<aaseq>KEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPL EDYQEELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVSGN KDLYLGTFSTQEEAAEAYDVAAIKFRGLNAVTNFDITRYDVDKIMASNTLLPADLARR NAATTTSKDDHSAAGAGAIVSVHSAADIAVADTLWKATTAPRQQQQHHDDVVLSGADQ AAFSVLHDLVAVDAAAAHQQQQQQQHMSMSAASSLVTSLSNSREGSPDRGGGLSMLFA KPSPAVAASAQQQASTKLMAAPLPLGSWVSSPPASARPPAVSIAHMPLFAAWTDA</aaseq> |
| Gene Sequence |
<dnaseqindica>3..33#184..192#304..392#494..567#1599..1649#1842..1918#3602..4266#agaaggaaggccagaccaggaaagggaggcaaggtaattaattaatcaccttttcttattcaccatcattagcatcattttaatcgtaattactgcctaactaatcactcacaagcttgctcctgttcttcgcttctggttttgtgtgtactactgctgatattgctgcgcctccctgatcagtttatctcggtaagtgttattacattcctcatgtggtaactttacatggtaaaaatgttctcgtggtaaaaagtaaaaataaataaaaaaagttcttttactttggttgggggtgattaggtgggtatgacatggaggagaaagcggcgagagcgtatgacctggcggcgctcaagtattggggcccttccacacacatcaacttcccggtaattaatcaattcaattaaaatttttgattctgtaagtactgttaattaattagttggttaattgaataatgtgcatgcatatgtatgtatgtatgcagctggaggactaccaggaggagctggaggagatgaagaacatgacaaggcaggagtatgtggctcacttaaggaggtaattcataaaaacagattgttcttgttgccaaaatgctgaataaattaatcacttaatctgcactcttcagaaaaatgactagacaaatggatgtatatatacctgcatcatacatagttaatgtcatgcttgcacaaagtcaactaaatgggtaacaccacagcatgtacagtgtcatccgcaccacaatgtaggacacattttagacactttcaaagccattcatggaatatctggatttatgttttaatattgatatgcaataagaaatgatgagctgtacattgtgaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatagtaaccaataatcaaaatgatgaataatacatggattatagttatggacaaattagctagtgctatatttaagatagagagtgacgagtgcataatgagaatatgtacttgtttgaagagatgcacataaaactacgagaagtggatttttatctattgaggggatatcatcccctagttttctttataccattcaaatgtcatcaaaatattttttttatatgataaatcaatattaggtatgtcacttcattaacatacaagtttatatttgactacgaatagtatgcactatgtgattaagtacaaacaaatttgactcaatgtgtaatatacatattgttgaactattattcgtgtactaattaattaaggagatcttcctctaatttgggataatggttaataacaacaatataatgatgcaaactttaaaagtatttgttacttgtggtaacgtgcaagttcctataaatatatgcatgtgaatgtgcagagaatggtagtagtatagtactactatagttaacgttcctaccggccagtgtctgaactctgaagaagtctgaacatgtgtgtttgttttggtgtgtggatgcaggaaaagtagcggtttctcacggggagcttccatgtaccgtggtgtcacaaggtaacaatacatacacacacacacatcgatctatcgatcgatcggtacatttgtttatgtactgcacatttccttactgaaaagtacacattttgcattggtgagaaagatatacgtacgtaaattcagaagaagaagagaaaattcagaataaaaatttgtacatgtgttttttggtttgcttatatgcaggcatcatcagcacggacggtggcaggcacgcatcggccgagtctccggcaacaaggacctctacctcggcactttcagtacgaatcattatatcgatcctaattaaattagccttaattattttttctagctctgaataataattctgcaaacacgtacatacatatagtagacgacgacgacgacgtctgcaatgcatgcatgcatggtcgatcgatcgattgatcgtcttttgcatgcatgcctgcctccatgcatgcatgatgagtactatctagtaccaattcatcatgatgcagattcatagcttaattagatcctacacatacatgcttcctccgtcttaaaaaaatcaacttcttgctacgataaatctgaacgtaacctatgtttagatttagtcagaaatatgtttttttctgggaaggagtgcatagatatacaattagagcaggtacaatagcacactataagtcagctataaatacatttatatgagataaaagataagagagaagaccatcacggattccaagatacaatgtatttatgataagtaggaccagatattaatagtgtagtatatgtttataggtaactattatatgaattggctattaaatttactatatactacctccatattttaatgtatggcgccgttgactttttatccaatatttgaccatttgtcttattcaaaaatttatgtaattattatttattttattgtgacttgatttatcatcaaatgttctttaagcatgacataaatattttcatatttgcacaaaaattttgaataaaacgaatggtcaaacgtttatcaaaaagtcaacggcgtcatatattaaaatacggagggagtatgatttaaagctattaattggctataatattaaacttcctcttatgtttatatggatgcaatgtgagagacgatgagaggttgcgtgggcattgcgtttgcatgcggaggctgtcatgctccaggggcacaaccccgtcctgtcacaatgatcattagcatgtcacataattttgcatatactataatactccatttcatacctccatccatcgatcgcatgcaacgcaacgcaaaagctggctatctcttctctctctctctagatcgtctaaagcttacatgtgcatcatgcctccctgccaaagaatgtttctctctctctacactaatcttagagagagagagagagagagatagagagagagagaatgagagagatgaatgtgtgtatgggcctgtgcgtgcagctgcgattctctcacttttgcataaggctgaccgacctagtttgcaaatgcatgcattccctgggcctgcatctgcatatcctttctagtttttacactgtccagccatcgcacgcgcctgcttgctttcttccctgctttctttgaccattttttacgtaacatatgcattgcatattttgcggttatctcagggatcttcctgctaacttcacaaggtcgtgggttaattagatgatctggattcgaaacctcaccccttctaattatttgatattaggtcatttctaatattcgtgtctttttgcattgcttatcgtagcgcatcacattttttaaatgtaaaattaaatattttgcttatcgtagcacatcacatttttagtgtaaaattaaatattttcgattgtaggtataaaattttatagtgtaaaattcagatatctcgaaggatggtaaaatttgtggatggatggatgcaggcacgcaggaggaggcggcggaggcgtacgacgtggcggcgatcaagttccgggggctcaacgccgtcaccaacttcgacatcacccgctacgacgtcgacaagatcatggccagcaacaccctcctccccgccgacctcgcccgccgcaacgccgccaccaccacctccaaggacgaccactccgccgccggcgccggcgccattgtctcggtgcactccgccgccgacatcgccgtcgccgacaccctctggaaggccaccactgccccgaggcagcagcagcagcaccacgacgacgtcgtgctgtccggcgccgaccaggccgcattctccgtcctccacgacctcgtcgccgtcgacgccgcggcggcgcaccagcagcagcagcagcagcagcacatgtccatgtcggcggcgtcgtcgctggtgacgagcctgagcaactcgcgcgaggggagccccgaccgcggcggcggcctctccatgctcttcgccaagccgtcgcccgccgtggcggcgtcggcgcagcagcaggcgtcgaccaagctcatggcggcgccgctgccgctcggctcctgggtctcctcgccgccggcgtctgccaggccgcccgccgtctccatcgcccacatgcccctcttcgccgcctggaccgacgcctaatcaccctcgccgccatggctcaccggagtagtaattagctagctatagctagagctaggcaacgacgacgacgacactagcttaattagctcgtgtttagttggttaatttagggttcttggttgctcggcgacatgattagctaagctagcgatgtagtagtagcactagcagctagttggagtattaattagtatcactcaaggcgaggaaaccgacgcacgccatggccgcggcctctcccccacctttccttcttctccggcgacggccggccgccatgtatcagagagctcgatcggcgccggagaagaagggtttttgtaacacggaggccggagatctatcgaggcggtgcttctcctccaaaatccaaaactatatatcttatattaattaattaattaattatagcctcaccaaattaatttctcaa</dnaseqindica> |
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