Difference between revisions of "Os08g0531700"
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MADS-box transcription factors, besides being involved in floral organ specification, have also been implicated in several aspects of plant growth and development. In recent years, there have been reports on genomic localization, protein motif structure, phylogenetic relationships, gene structure and expression of the entire MADS-box family in the model plant system, Arabidopsis. Though there have been some studies in rice as well, an analysis of the complete MADS-box family along with a comprehensive expression profiling was still awaited after the completion of rice genome sequencing. Furthermore, owing to the role of MADS-box family in flower development, an analysis involving structure, expression and functional aspects of MADS-box genes in rice and Arabidopsis was required to understand the role of this gene family in reproductive development. | MADS-box transcription factors, besides being involved in floral organ specification, have also been implicated in several aspects of plant growth and development. In recent years, there have been reports on genomic localization, protein motif structure, phylogenetic relationships, gene structure and expression of the entire MADS-box family in the model plant system, Arabidopsis. Though there have been some studies in rice as well, an analysis of the complete MADS-box family along with a comprehensive expression profiling was still awaited after the completion of rice genome sequencing. Furthermore, owing to the role of MADS-box family in flower development, an analysis involving structure, expression and functional aspects of MADS-box genes in rice and Arabidopsis was required to understand the role of this gene family in reproductive development. | ||
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===Evolution=== | ===Evolution=== | ||
Revision as of 04:13, 5 June 2014
Please input one-sentence summary here.
Contents
Annotated Information
Function
Please input function information here. The basic function of molecular behavior, such as catalytic or combination. It describes the activity of the gene product at the molecular level or function, a gene product usually has one or more molecular function. The function of binding to a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.It has so many molecular functions,such as: antioxidant activity,enzyme activity,the ability of combination,nutrient storage activity,transcriptional regulation activity, translation regulation factor activity,molecular conduction activity and protein transport activity.
Expression
Please input expression information here.
MADS-box transcription factors, besides being involved in floral organ specification, have also been implicated in several aspects of plant growth and development. In recent years, there have been reports on genomic localization, protein motif structure, phylogenetic relationships, gene structure and expression of the entire MADS-box family in the model plant system, Arabidopsis. Though there have been some studies in rice as well, an analysis of the complete MADS-box family along with a comprehensive expression profiling was still awaited after the completion of rice genome sequencing. Furthermore, owing to the role of MADS-box family in flower development, an analysis involving structure, expression and functional aspects of MADS-box genes in rice and Arabidopsis was required to understand the role of this gene family in reproductive development.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
Please input related labs here. MADS-box transcription factors, besides being involved in floral organ specification, have also been implicated in several aspects of plant growth and development. In recent years, there have been reports on genomic localization, protein motif structure, phylogenetic relationships, gene structure and expression of the entire MADS-box family in the model plant system, Arabidopsis. Though there have been some studies in rice as well, an analysis of the complete MADS-box family along with a comprehensive expression profiling was still awaited after the completion of rice genome sequencing. Furthermore, owing to the role of MADS-box family in flower development, an analysis involving structure, expression and functional aspects of MADS-box genes in rice and Arabidopsis was required to understand the role of this gene family in reproductive development. Through the mutation research of flowering plants that SEPALLATA - like by MADS - box genes on the differentiation of the sepals, petals, stamens and carpels in floral decisions are required, as well as to the decision to determine E class flower organs.SEP - like genes encode transcription factor by MADS domain structure, and system analysis showed that such genes of angiosperms constitute a special branch of gene functions in dicotyledonous plants and show different degrees of redundancy and the functionalization. When OsMADS7 and OsMADS8 expression are cut at the same time, the transgenic plants show serious phenotypic defects,flowering delay, homologous into stamens and carpels lodicule, palea/lemma of organs, and lost to take decisions.In the analysis of different SEP - like rice gene expression and protein interaction characteristics of space,scientists found that these genes are very similar, but also show some specific differences.
References
Please input cited references here. 1.The Rice Annotation Project Database (RAP-DB): 2008 update. Rice Annotation Project, et al. Nucleic Acids Res, 2008 Jan. 2.Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana. Rice Annotation Project, et al. Genome Res, 2007 Feb. 3.The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. Ohyanagi H, et al. Nucleic Acids Res, 2006 Jan 1. 4.The map-based sequence of the rice genome. International Rice Genome Sequencing Project. Nature, 2005 Aug 11. 5.Rongfeng Cui;Jiakun Han;Suzhen Zhao;Kunmei Su;Feng Wu;Xiaoqiu Du;Qijiang Xu;Kang Chong;Günter Theißen;Zheng Meng Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa) The Plant Journal, 2010, 61(5): 767-781 6.Rita Arora;Pinky Agarwal;Swatismita Ray;Ashok K Singh;Vijay P Singh;Akhilesh K Tyagi;Sanjay Kapoor MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress BMC Genomics, 2007, 8: 242
Structured Information
| Gene Name |
Os08g0531700 |
|---|---|
| Description |
Similar to Developmental protein SEPALLATA2 (Agamous-like MADS box protein AGL4) |
| Version |
NM_001068870.1 GI:115477478 GeneID:4346134 |
| Length |
5010 bp |
| Definition |
Oryza sativa Japonica Group Os08g0531700, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 8:26595185..26600194 |
| Sequence Coding Region |
26595340..26595401,26595980..26596180,26597105..26597183,26597408..26597482,26597899..26597999 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008401:26595185..26600194 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008401:26595185..26600194 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atggcagagaaaaagaagaagaagaagaagaagaagccgcaatcactcctagtccttacaagctggagatcgatcgggatggggaggggtcgggtggagctgaagaggatcgagaacaagatcaaccggcaggtgacgttcgccaagcgcaggaatggcctgctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggtcgccctcatcatcttctccaaccgcggcaagctctacgagttctgcagcacccagagcatgactaaaacgcttgagaagtatcagaaatgcagttacgcaggacccgaaacagctgtccaaaatagagaaagtgagcaattgaaagctagccgcaatgaatacctcaaactgaaggcaagggttgaaaatttacaacggactcaaaggcaatactacaaatctaaacataggctgtgtttagttcggtccaaagtttggaatttggttaaaattagagacgatgtgactgaaaagttgtgtatgtatgaaagaaatttgctgggtgaagatcttgattcattaggcataaaagagctcgagagcctagagaagcagcttgattcatccctgaagcacgtcagaactacaaggacaaaacatctggttgaccaactgacggagcttcagagaaaggaacaaatggtttctgaagcaaatagatgccttaggagaaaactggaggaaagcaaccatgttcgcgggcagcaagtgtgggagcagggctgcaacttaattggctatgaacgtcagcctgaagtgcagcagcctcttcacggcggcaatgggttcttccatccacttgatgctgctggtgaacccacccttcagattgggtaccctgcagagcatcatgaggcgatgaacagtgcgtgcatgaacacctacatgcccccatggctaccatga</cdnaseq> |
| Protein Sequence |
<aaseq>MAEKKKKKKKKKPQSLLVLTSWRSIGMGRGRVELKRIENKINRQ VTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYA GPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRQYYKSKHRLCLVRSKVWNLVKI RDDVTEKLCMYERNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQ RKEQMVSEANRCLRRKLEESNHVRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPL DAAGEPTLQIGYPAEHHEAMNSACMNTYMPPWLP</aaseq> |
| Gene Sequence |
<dnaseqindica>156..217#796..996#1921..1999#2224..2298#2715..2815#3480..3579#3956..3997#4089..4130#4415..4572#4771..4843#caatccaacaaatctacataggaattactctttcggactcaaactcctcaattttttcccacttaaaaatccttcgccctaattaaagttcacccgttacaaatggagagcgatcgagctctcaactagcctaattcaagaggtgatgaagaaaaatggcagagaaaaagaagaagaagaagaagaagaagccgcaatcactcctagtccttacaaggttctgccgccgtggtgaggccaatggcacatactttcaggcttcagcccaccaaatggagacgccatacggcctatgctgttccaggcccaaattacaccggctaaaccccatacggcccatacatataccattcctggtccaaaaccggtgggttcccgagtagggaatcggacacggcccgactcaaacacacgcactctccaagtctcgagctccacgacgacgacgacgacgatgacgatggcgcacagggcaggggcaggcaggtcacatgtggtggtgaatggtgatggccatccatccatccaccaatgaaaaggcgagtcgtggtaaagaagacggatggacggatggatgggcatgggcggcgagcgatggacgcgacgcgacccatcctggtttcccgaaacgcgctacgctgccgagcatctagggtttcccacccggtacgaccttgccgaaaatggcacccactcaccatctccatccttttaatccccttcctccacctcgcttgctttcttgcagtggtggtggtggtggtggtgagatctagcttggttggttggttgcagctggagatcgatcgggatggggaggggtcgggtggagctgaagaggatcgagaacaagatcaaccggcaggtgacgttcgccaagcgcaggaatggcctgctcaagaaggcgtacgagctctccgtcctctgcgacgccgaggtcgccctcatcatcttctccaaccgcggcaagctctacgagttctgcagcacccagaggttcatttcatttcctagctactctaatccatccatcaaacccacatcacatcacacttcaatttcgcaagcttaattagccaccctttcgattggatctgtcctgtccagatctgttcatgcatcatcaaaagctagctgcatctgccttttgcccggaattccagctgcatgctatgccggcttgatttctgcatacgatcttttgacaagaaacgagctgtggcgtgttcaaccgcacgctacctagctagctagattgctcttgcttccgtgggttttcacgccgggatagatctgggcaatatcctgggtttagggttttgcttcctggtccgtgtggtagatcggtgcacatctttagtttgccagttggtttccttctccgatctgtccgtcttacgtgcgatttcttcatgtgtggtctcggaactcgcaaaggaactgaaaagtttgcttatttacgaccttttcttctggatctgcaaggttctttgtttcccttagctaaatccttaaaagaagtagtccaatatatacttccatgcataatattgcaaaataaatgatggtttgttgataaccaaagtaaagagacataaaaactaactagagactttttttttcaaaaaaaaaaaagaagaatcttgtctactgtgttatatatcagtagtatatatacagagatcaacggcttcagtctactaatcaaacaatataatctcatagggggacttgcaagaaccatatgttccatttctgaatgtattttaagctagaatgcatgacaacgaaaaaagggcattgtggtagtaaatgtgccatgcccctattgtagatcttaatcatcgttaatctctccttcttgtgatcccatgcatgcactaattttaattaattcctcatgtcttttgaactttgtagcatgactaaaacgcttgagaagtatcagaaatgcagttacgcaggacccgaaacagctgtccaaaatagagaaagtgaggtaattattaattgtgttcattaattacacccattattatgcagcaaactaattttggtttgaccacataagtgttttctcacatgtaacattacttttctactaccataatagcatgtgcatatgaaggagatggtttgcaattgcaatatgttatatacatatgtcctacacatgcattttcaaaacatcgaattaatggtcaactattttgtttctttcagcaattgaaagctagccgcaatgaatacctcaaactgaaggcaagggttgaaaatttacaacggactcaaaggcaagttatgatgcattttcactgataagcttctctcttgatgatgcttttaggtttgcatttagacgattttatgcaagagcggttttgtaccacaaaaatatgattttcgatgtcatagcgctgcaagaatgatgtgaataaactcatagtatttctttttatagtgctgtcgttataaacaaaaaaaatatcatgttaacagtaattaaatgttgattccagctaattgcttggatgttatcagcctagagaaccttaggtgggcatcctaattttaaggtatagtagcacaactactagctattataggcgggctatcaataggtagaataataaaaacaaagcacaaacagtgtaccatatactccctccgtctcataaaaaaaccaacctagtactggatgtgacatatcttagtactacaaatctaaacataggctgtgtttagttcggtccaaagtttggaatttggttaaaattagagacgatgtgactgaaaagttgtgtatgtatgaaaggtttgatgtgatggaaagttggaagtttggaaaaaaaaactttggaactaaacacatcaatacctttgttcagattcattatactagaatgtgtcacatctgatcctagattcgtttttttgggacagagggagaaagtcacaagctcatagaataaatcaatcatacaactagtataaagcatctcaaatctattttgttttatcaaaatctagttgaggacacacatatatacaatccaggttcttatagcattctcaccattaattaattaaccaatagatcaagaaatcaactgtactactcaaaattagacaggcagctgtcgaccagctgataagatctatatataacatgatgtatatacatgtcattggtaaaaaaaaatcacatacatgcatgtcatagtagtactactcgcaggtcgtagttccaacatgcaactgcataatgaagaagtacatagtattgagtattagcttagctgttacacatgtaataatacatcattttgaaacacacgctgtaagttaaattttatttggaaacattagtagttaattaacttcatttttgtacttcaatatagtaattgaaagtggaagtctaattttcatatgtacataactaatactcttctacccctatgtgtggactatgacagaaatttgctgggtgaagatcttgattcattaggcataaaagagctcgagagcctagagaagcagcttgattcatccctgaagcacgtcagaactacaagggtaatgattgtttttgggtgctagatcacaaacaagtaccatgcatgcatgcatgtactccctctgtgaaaaaaaaaattccaatcctagttatgacagtgtgtacacgtgtatctaagtttctagttagaattgtgttttgtattggacgaagggtgtaggtgtgtagcactagtttttgaagtaacacaaaggagtacatacacaccatatatgttgcatgcagatgcaattgacttaaatgcagccctattgttgatcgtgtggatagctacctcacgcaattattaatttcctgcgtaaaatttataggaacccatgcatgaaagatctgaattgtaaatcttacttgtcaatgcttttaatcctcttgtagacaaaacatctggttgaccaactgacggagcttcagagaaaggtatatttttaagaattatcaataaaaagtgttgatcacatttttcttccttagcagtagtagatattgaccctgtttacttaatttacaggaacaaatggtttctgaagcaaatagatgccttaggagaaaagtaagttatacaactcttccatctttctccttaggagaaaagcaagttatacaactcttccatctaaagaaaggtttattcaactaatcattcatgaccaagaatcttaagataaacctcaactgaactatggtgtgtttcctatatatatgaattatggagtatatagtccatgatcaatataatgcagatatcatggaatggaagccctgattaatgtagtgaaagggatattgaaaataactgcaatgtgatatcatttaaattgttttgaaaaactgtagctggaggaaagcaaccatgttcgcgggcagcaagtgtgggagcagggctgcaacttaattggctatgaacgtcagcctgaagtgcagcagcctcttcacggcggcaatgggttcttccatccacttgatgctgctggtgaacccacccttcagattgggtatgctcatatgatctcttcctatatatacttggaaccaattgccggtctatatatataatctgatccaggacaatatagctagctaggctagtttttgtatatgcacacttaatattgtatagatctttaaataatggctatatttttttgcttatatatgcctctgaaagtctgaatgtgatacctgttttgcaggtaccctgcagagcatcatgaggcgatgaacagtgcgtgcatgaacacctacatgcccccatggctaccatgatgatgacggggacaatgaattacgaaataacaaggat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