Difference between revisions of "Os06g0254600"
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Os06g0254600 is a stress responsive gene. It encodes the caleosin which mainly lay in oil body or lipid body. Caleosins not only promote formation of oil body but also is related to drought stress. | Os06g0254600 is a stress responsive gene. It encodes the caleosin which mainly lay in oil body or lipid body. Caleosins not only promote formation of oil body but also is related to drought stress. | ||
===Expression=== | ===Expression=== | ||
| − | It includes six exons and the length of the second intron is 5kb.It is located on chromosome 6.There are two other caleosin genes-Os06g0254300 and Os06g0254700 in chromosome 6.These three genes get together because tandem duplication.Normally,the expression Os06g0254600 is relatively low in flowers and leaves,whereas expression levels are relatively high in roots.When subjected to drought stress,it's expression are suppressed. | + | It includes six exons and the length of the second intron is 5kb.It is located on chromosome 6.There are two other caleosin genes-Os06g0254300 and Os06g0254700 in chromosome 6.These three genes get together because tandem duplication.Normally,the expression Os06g0254600 is relatively low in flowers and leaves,whereas expression levels are relatively high in roots.When subjected to drought stress,it's expression are suppressed.Molecular weight of caleosins range from 15KD to 30KD.Caleosins have a significant feature that EF-hand domain in N-terminal can combine Ca2+,a central hydrophobic region and a security protein kinase phosphorylation sites in C-terminal.Caleosins's N-terminal and C-terminal are located in the cytoplasm,however central hydrophobic region are anchored in the phospholipid monolayer membrane. |
===Evolution=== | ===Evolution=== | ||
Revision as of 03:17, 8 June 2014
Os06g0254600 encode a caleosin
Contents
Annotated Information
Function
Os06g0254600 is a stress responsive gene. It encodes the caleosin which mainly lay in oil body or lipid body. Caleosins not only promote formation of oil body but also is related to drought stress.
Expression
It includes six exons and the length of the second intron is 5kb.It is located on chromosome 6.There are two other caleosin genes-Os06g0254300 and Os06g0254700 in chromosome 6.These three genes get together because tandem duplication.Normally,the expression Os06g0254600 is relatively low in flowers and leaves,whereas expression levels are relatively high in roots.When subjected to drought stress,it's expression are suppressed.Molecular weight of caleosins range from 15KD to 30KD.Caleosins have a significant feature that EF-hand domain in N-terminal can combine Ca2+,a central hydrophobic region and a security protein kinase phosphorylation sites in C-terminal.Caleosins's N-terminal and C-terminal are located in the cytoplasm,however central hydrophobic region are anchored in the phospholipid monolayer membrane.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this gene
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References
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Structured Information
| Gene Name |
Os06g0254600 |
|---|---|
| Description |
Caleosin related family protein |
| Version |
NM_001063838.1 GI:115467407 GeneID:4340664 |
| Length |
7926 bp |
| Definition |
Oryza sativa Japonica Group Os06g0254600, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 6:7995918..8003843 |
| Sequence Coding Region |
7996130..7996310,7996928..7997053,7997929..7998023,7998187..7998272,8003434..8003547 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008399:7995918..8003843 source=RiceChromosome06 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008399:7995918..8003843 source=RiceChromosome06 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgagggctcaacgaccatcgttggcagctgctggcaatccggtacttgctcttctgtttctatgggttcttagctggggacatgtaacggcggaaattgatatcgccaacatgacggcgctacagaaacatgtttcgttcttcgaccggaacaaggatggcattattactccgtcggagaccattgaaggggttgttgcaatcggttgtgacttcgcatttgctagagaccttgccgccagtgtgcatgctggtcttggtcctaaaacaagccccaaggatgcaccattacctcacttatcgatatacataaacaacatctatagaggaatgcacaggagtgacacaggtgcactagatgctaaaggaaggtttgttcctgcaaagtttgaggaaatattctcgaaacacgcaaaaaatagaccagatgcattgacatccttggaggtcaaagagatgattctagcaaatcgagatccaaatgacccacaatcatggggtgcagctataaaggagtgggggctaatttatggtcttgcgagtgataagaacggatattttcacaaggatagtgtgagaggtatatacgatggtagtgtgttcgtcaagttggagaaagagagggaatcttcacaaagtacagtttgccggagcttatcatttcggagttctgtataa</cdnaseq> |
| Protein Sequence |
<aaseq>MRAQRPSLAAAGNPVLALLFLWVLSWGHVTAEIDIANMTALQKH VSFFDRNKDGIITPSETIEGVVAIGCDFAFARDLAASVHAGLGPKTSPKDAPLPHLSI YINNIYRGMHRSDTGALDAKGRFVPAKFEEIFSKHAKNRPDALTSLEVKEMILANRDP NDPQSWGAAIKEWGLIYGLASDKNGYFHKDSVRGIYDGSVFVKLEKERESSQSTVCRS LSFRSSV</aaseq> |
| Gene Sequence |
<dnaseqindica>7534..7714#6791..6916#5821..5915#5572..5657#297..410#21..96#gagagcaattctgcgagacgatgagggctcaacgaccatcgttggcagctgctggcaatccggtacttgctcttctgtttctatgggttcttagctgtaagtccctctggcacctgccttgtttttccagatttttctttttatccaccttcatgttatacagatggattcaaatattcaatgaatgatttcaggctgtaattaaaatgggtgaaaccctttcagccaaaaagaaagtggtggcatacaatttttctaacttgcatgttattatattgctgtgatttttaattaagggggacatgtaacggcggaaattgatatcgccaacatgacggcgctacagaaacatgtttcgttcttcgaccggaacaaggatggcattattactccgtcggagaccattgaaggtgatatgattagctatattgttctgtttaatttgcaatgagttccgagaatattgtgctagtttggtatggagagatatacttaagttcaaaaccgatattttactctagctatatgatttaaattcagaacttcatgtgcactgtagcagccatatataaaaagctagcaaatgcatagttaaggtaatgttatttgagcttgcattaagggtatgttatattgagcgcaagccatagtgataggtgtgcaaaaactatgtgttctaaaaaaaatctacctctatgtggagaagaagagtttttttttaaaccccgcagggtgtatttgtattaaagtagggggaaacattgtacaatagcccaaggctaggagattacaaaagaaaataaaaagaaatatgagagggggagggggactgttagggggaaggggttgggggtacatgtcacgatttacagattaccaatggtacttccacgagtgtacgaagacatggattggatgccccttgttccacttgtgtgccatagccatacttcatcaattgcccgaataaggaggtgccaatcaaagtttggtgaatgagatgtgtggtccagctgctttgctagtaattatggttgatgttgccactgttgatgctgctaaatacgtggcaaatatgtggattcaacatatacggaggcatacatatatccgtcttcgaaaaccactcctgagaggtttttttgtggtttgcgtgaaaaccgtggactaccggtgaagttcgacaaaattttacaaagaacttaacaattttttttctaacttggcatatgcaaaaaccatggattaccggcgaagttcaaaataaaatgtaacgagtttaaattcagttagaatttttcttaacttggccggcttaatattgagtggtttgtgatcatcttgagccaactcgaagcctctggttattgttttataaacctgctcatatggatgttaagaaaacatcaggctccaagagcacgtcaaatttcaattcagagaattttatatttacttagaggttaatataataaggctagagaaaatctgagctaaggtgattcccttaaacctggtctatgtttgaatgagctccttgcagtggtaaatactccccaaatcttaggttccccaaacaccagtctcacctagactatgagatctaataattacacaatccaaacattgaaccagtaactataactctaacttctacagattcttaattgctgcttctcataatctctagcccttaaataaggctttagtttccgtgtttgacaatcaatctactagttagcattttttgggttgaatgctgggggattacttaggttaccgatccatagaaccatagtgcaaaagtttaaccaatcacccaaccggccggttagactctctgttcaccggagccatccgtccgattggcgatcacccattagaatgtggtttagtagttaactacatgtaacatttatatttgagtagtaagtggtctactgcctagttggtccccgagggctctctcactcccacccaccacggatcaattctcgcatttagccggctcagtttatcttaggtcgttgattcacatgagaaaccacctggttcatccgggtcacataagttcaaatgcagtgagggtccttaaagcaaaccaagctgctcatgctattttttccggttattccgttcaaccgccagtcagatccatgtttcttactatatatatgcaacataaggaaagttaggttcactagaacggattccctcatctcaaatgggcagtaagccccatctcaatcaggcacggcgtccgtcacaggctagaagtcactgatgtgaaaagtaatctcaatcgggcaaacggccgtcactgatgaacctatctcaatcgggccctaattgaagcccatcaccgatagctttgacccagactactagtcaaactatagcccgtcacagatgacctatctcaatcggaccacaaatagagcccgtcacagatgactactaaactcaatcgggcctaaactagagcacgtcacagatgatactcatctcaatccggcctaaactatagcccatcacagatgactgtcatcttaatcgggcattaactacaacccgtcacagatgaccatcatctcaatcgggcattaagttgtggcccgtcatagatgagtataatccacaaaaaaaattattttttggctagcctcaggcctttgctagccatgcccgctgcaaaaatgacagaaacacatatatccaatatccccagctccccagcatcacccattcatatatatgcattcacatacacagccatcaatatatttcacacaactacattcacagaacatccattttgatctcatatttcacatccattcacatatttcacatccattcaaatatttatcatatttcacctgcaaaaccgagtaaattggatcaaatatttatttagcaagtattaacataaacataagaaatatatatataaatataaacatcacagttacataatcaatgttcatcattgcctaaacataaaagttcaacaatgttcatcattttagtttaagcctaaacattcctttggggttaattatttcgcggaggatgaagctggctatctcctcgcgaacctcctcaaagctggtaggcagagacttggtaattttgccctacattgtcataattcgagattagttgatcgatcatatatatgtacttcgatgtagttagttagtctatcacaattgagaccaccgacctcaaactcagccaaagtcttcaccttttctctgtacagaaggcgcatgttgtggcacacatggaatccgcattggtcacctatttgttgctttaccgggaagtattttttttggatgagggtgtcatgtcctgtcttcctgaggcctcatctttgcacgtattgggcccacgcttcatctatcgctagttgaatcggggtccaatcatatgcgttcttatcaattctggagttcaggtagtgacatgtactccacttagatgttatgaccaaaaggatccaatgggcactgcggcattaatatagtgaaagttaattagtactgaaggaatgtgtcatgctgttgtatatatttagggaacacacttactattgattataggcgcacataatgtactccttgtctcggcgggaccacaaggtgtcgtagatgtagttgaccattccttgacggtcattctggagatttgtgacatttaccacttgtgaatcaaggaaggcaacttccggtgcattcttctgacaccattgccaacttaacctacatgcaacataaacgatcttgtaagcgagttaaaccgattgttattaccaaattgagttgggcgacaatacttacaaggagtagcacttaatgaggcttgtgtccaccgctcggagcctatagaggtcgaatagatccttgaagtcgaccacgatataatttgttggaccaaggaatggctttcgatcgtgctctccaaggatttcagtagctttattcggcctcctggcgttagatttctccatgtagtatatgtgaaggtccctgcaagcggtgcccattgcggcaagcacgtcatctccaaccaatggcatgcctagttggaactcctgtgaagcaacgcatttcttcttgacctctttgcccttagtctcttcctgccccttgcctagatctagcttccttggatctagaagcgaggcttgcacctttcctcctcttcctctcccctttgcatcggtaaatctctagcctgtggtaaatctcatgtagtaaatctctagcccttaaataaggctttagtttccctgtttgacaatcaatctactagttagcatttcttggttgaatgttgggggattacttaggttatcgatccatatagagtgcaaaagtttaaccaaccacccaacagccggttagactctcggttcatcggaaccgtccgttcgattggcgaccacccattaaactgtggtttaatagttaactacatgtaacatttatatttagtagtaagtggtcaacttcctagttggtccccaagggctatctcgctcccacccaccacggatcaattctcgcatttagtggctcaagttttgttggtgagcttgttaagccagtttatcttacggagtaggtcgattcacatgagaaaccacctggttcatccgggtcacatcagttcaaatgcagtgagggtccttaaagcaaaccaagctccacatgttatttgttccggttattccgttcaaccggtagtcagatccaggtttcttactatatactactacatatgcagcgtttctaacataaggcgagttaggttattcaactcttgtgcttggttaattaattcattcatgattaaggtggccaaaatgcctaacctgggttttggatattcacatgcatggaaattagttttggatcacaattagttgatgtgtgcattagcacataggaaaaagtttaaataccgcaataaactttggatgaaagtctgtatagcatcctgaactttaaaactggacatccaacctcctaaactttgctataccatccatattaccccctaaggtgattttggatgacggttttgcatatttggaagcttagatgaataatttgaataactaatataacatatttgtatatcataagttataagccattaatttatttctatacagtatatcatactattattggtatttatttgtaaatgagagttaataagaagcaaaaagaaatatttcagtcaaaattttaatatatatatctaaagtgtatgacatgatcaaactcacccaacttatatacaaattagacaaaatcactatatgcaaaaccatcttaaggggttcaatttacccttgtataaatggtattgtaaattttaggtggttgaatgtccgatttcgaagttaagggtgttagatggacttacatccaaagtttatgggggttgtttggactttttttctagcacattatattatattggaactagtctctataaaatcactgcaaattaatttatatcttactaacgtatactgcttaatttggattgcaggggttgttgcaatcggttgtgacttcgcatttgctagagaccttgccgccagtgtgcatgctggtcttggtcctaaaacaagccccgtactctctcattccctcccataactctaatccaaaatcatataaaaataatgacttgtttattatgaatttggtccaaaatagagtaactagatatgctatttaatttattgtacacaagggaaaaattgacccggtattgtttccgcattcaaatgcgcagaaggatgcaccattacctcacttatcgatatacataaacaacatctatagaggaatgcacaggagtgacacaggtgcactagatgctaaaggaaggtaacaccaaccacatgcctatatatacatatcttacataaatgttagaagacatcacattatatcatataatgtcaagcatattaacaataatatgtgacacatgtatctaaatagcaagataattacatatttttagttaaatcctttaggagtacatacaaaagaactttagtgagttttgagcatttgctttatatactctatcttttgtttaataagaaatacggagtacaacttttggatgcatattttattccactttacatacattagtaatactatatatacatgattaattaagttatttattaatacatgactatatatacactttacatacattagtaatactatatatacatgattactcaaattcctcccacacactcatttctaatactgtatgtgttgcaatcaatccagaggtcataatagtaactcactacatttttttccttaaatcaaaatgatcatggcatcttcctatatttatttgagtgtagtattgtctatgtgttaccgtaacccaattagtgtaaagttatttattagccaagcctatttaagcctggtctttagaattaattgcatagtctttttgaggtttgataaaacttttggataaaagtggcacgcttttcaaactgctatgcagtgcatttcgtgcaaaaactttctatatgaaagttgctataaaatataagattaatccatttttcaagtttgtaataattaaaactcaattaatcacacattattaccaccttattttgcgtgaaatacttaatctttatcttcatcttcattttcagaagattcaaacaccacctaaggtttggatctatatatattttaaacatgatgattttcaggtttgttcctgcaaagtttgaggaaatattctcgaaacacgcaaaaaatagaccagatgcattgacatccttggaggtcaaagagatgattctagcaaatcgagatccaaatgacccacaatcatggtatttttcttaatatgtttggtcagttactatcaattactcataaaaaaaagtcaattacgctcttagggcaactataagttcactttgaccctttgaactgtatccgaagtttatctgtttacctcaaacttacaatcaccatgttttggttgccatggtggtgattttcactgatgtgcatggtttcctgttaggaattttttttcctttataataggtaaaacccaacctctacaccaacaccaacaccaatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgggggggggggcgcgctaggaaagtgaagttccaaaaccataatagaatacagttgaggatgttaattttcctggttttgaagttgaacgtgaaagggggattgttgtcttaatatatagatcttccattctaaaaacatcattttaagccattacccatatcaaataaaaaaggaaaatgtatgctcttacttaaggttgatgctataagttctaaaatgattttcattaaaacaaaattaaagtttctaacaaaaaatggttacttgtgattacttatgtttaattacacctttttcttgaaaacacaggggtgcagctataaaggagtgggggctaatttatggtcttgcgagtgataagaacggatattttcacaaggatagtgtgagaggtatatacgatggtagtgtgttcgtcaagttggagaaagagagggaatcttcacaaagtacagtttgccggagcttatcatttcggagttctgtataaagtaattgggaaatgaagttataatcacaaatacattgtattgcatcataggtattgttcgtgtacatgcaaaatgccatatttggagaagcactggtatggtagtagagttatggttgcatgactttaatcgttatgattcaaatctcgatttatatgaacattatgtatacatgggtgcactcttaataagatttgagaaaactaatttt</dnaseqindica> 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